James Bazire

ORCID: 0000-0002-7094-5021
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About
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Research Areas
  • SARS-CoV-2 and COVID-19 Research
  • SARS-CoV-2 detection and testing
  • COVID-19 Clinical Research Studies
  • Respiratory viral infections research
  • Animal Virus Infections Studies
  • Computational Drug Discovery Methods
  • COVID-19 epidemiological studies
  • Plant Virus Research Studies
  • Innovative Microfluidic and Catalytic Techniques Innovation
  • Vaccine Coverage and Hesitancy
  • Bacteriophages and microbial interactions
  • Biosensors and Analytical Detection
  • Electrostatic Discharge in Electronics
  • Virus-based gene therapy research
  • Influenza Virus Research Studies
  • Viral gastroenteritis research and epidemiology
  • vaccines and immunoinformatics approaches
  • Viral Infections and Immunology Research
  • Infection Control and Ventilation
  • CRISPR and Genetic Engineering
  • COVID-19 impact on air quality

The Francis Crick Institute
2024-2025

University College London Hospitals NHS Foundation Trust
2024

National Institute for Health Research
2024

University College London
2024

University of Bristol
2021-2023

The mechanistic factors hypothesized to be key drivers for the loss of infectivity viruses in aerosol phase often remain speculative. Using a next-generation bioaerosol technology, we report measurements aero-stability several SARS-CoV-2 variants concern droplets well-defined size and composition at high (90%) low (40%) relative humidity (RH) upwards 40 min. When compared with ancestral virus, Delta variant displayed different decay profiles. At RH, viral approximately 55% was observed over...

10.1098/rsif.2023.0062 article EN cc-by Journal of The Royal Society Interface 2023-06-01
Hannah Goldswain Xiaofeng Dong Rebekah Penrice-Randal Muhannad Alruwaili Ghada T. Shawli and 95 more Tessa Prince Maia Kavanagh Williamson Jayna Raghwani Nadine Randle Benjamin Jones I’ah Donovan-Banfield Francisco J. Salguero Julia A. Tree Yper Hall Catherine Hartley Maximilian Erdmann James Bazire Tuksin Jearanaiwitayakul Malcolm G. Semple Peter Openshaw J. Kenneth Baillie J. Kenneth Baillie Malcolm G. Semple Peter Openshaw Gail Carson Beatrice Alex Petros Andrikopoulos Benjamin Bach William Barclay Debby Bogaert Meera Chand Kanta Chechi G Cooke Ana da Silva Filipe Thushan I. de Silva Annemarie B Docherty Gonçalo dos Santos Correia Marc‐Emmanuel Dumas Jake Dunning Tom Fletcher Chris Green William Greenhalf Julian L. Griffin Rishi K. Gupta Ewen M. Harrison Julian A. Hiscox Antonia Ho Peter W Horby Samreen Ijaz Saye Khoo Paul Klenerman Andrew Law Matthew R. Lewis Sonia Liggi Wei Shen Lim Lynn Maslen Alexander J. Mentzer Laura Merson Alison M Meynert Shona C. Moore Mahdad Noursadeghi Michael Olanipekun Anthonia Osagie Massimo Palmarini Carlo Palmieri William A. Paxton Georgios Pollakis Nicholas Price Andrew Rambaut David L. Robertson Clark D Russell Vanessa Sancho‐Shimizu Caroline Sands J T Scott Louise Sigfrid Tom Solomon Shiranee Sriskandan David I. Stuart Charlotte Summers Olivia Swann Zoltán Takáts Panteleimon G. Takis Richard S. Tedder A. A. Roger Thompson Emma C. Thomson Ryan S. Thwaites Lance Turtle Maria Zambon Hayley Hardwick Chloe Donohue Fiona Griffiths Wilna Oosthuyzen Cara Donegan Rebecca G. Spencer Lisa Norman Riinu Pius Thomas M Drake Cameron J. Fairfield Stephen R Knight Kenneth A McLean

Abstract Background The mutational landscape of SARS-CoV-2 varies at the dominant viral genome sequence and minor genomic variant population. During COVID-19 pandemic, an early substitution in was D614G change spike protein, associated with increase transmissibility. Genomes are accompanied by a P323L polymerase (NSP12). However, is not thought to be under strong selective pressure. Results Investigation P323L/D614G substitutions population shows rapid emergence during containment phase...

10.1186/s13059-023-02881-5 article EN cc-by Genome biology 2023-03-13

Abstract The mutational landscape of SARS-CoV-2 varies at both the dominant viral genome sequence and minor genomic variant population. An early change associated with transmissibility was D614G substitution in spike protein. This appeared to be accompanied by a P323L polymerase (NSP12), but this latter not under strong selective pressure. Investigation P323L/D614G changes human population showed rapid emergence during containment phase surge wave 1 UK. from variants become part sequence. A...

10.1101/2021.12.23.474030 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2021-12-27

Abstract SARS-CoV-2 is the aetiologic agent of COVID-19 and associated ongoing pandemic. As pandemic has progressed, Variants Concern (VOC) have emerged with lineage defining mutations. Using a reverse genetic system, based on transformation recombination in yeast, series replicons were produced for ancestral Wuhan virus VOC Delta which different combinations Spike, membrane, ORF6 ORF7a coding sequences replaced encoding selectable marker puromycin N-acetyl transferase reporter proteins (...

10.1101/2022.10.11.511804 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2022-10-12

Coronaviruses pose a permanent risk of outbreaks, with three highly pathogenic species and strains (SARS-CoV, MERS-CoV, SARS-CoV-2) having emerged in the last twenty years. Limited antiviral therapies are currently available their efficacy randomized clinical trials enrolling SARS-CoV-2 patients has not been consistent, highlighting need for more potent treatments. We previously showed that cobicistat, clinically approved inhibitor Cytochrome P450-3A (CYP3A), direct activity against early...

10.1016/j.antiviral.2023.105766 article EN cc-by Antiviral Research 2023-11-30

Abstract Emerging SARS-CoV-2 variants require rapid assessments of pathogenicity and evasion existing immunity to inform policy. A crucial component these is accurate estimation serum neutralising antibody titres using cultured live virus isolates. Here, we report our updated culture methods for Omicron sub-variant JN.1 Caco-2 cells the subsequent evaluation (nAbTs) in recipients BNT162b2-XBB.1.5 monovalent Ancestral/BA.5 containing bivalent vaccines. We compared either Vero V1 or cells,...

10.1101/2024.04.17.589886 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-04-18

Abstract Influenza remains a significant threat to human and animal health. Assessing serological protection against influenza has relied upon haemagglutinin inhibition assays, which are used gauge existing immune landscapes, seasonal vaccine decisions in systems vaccinology studies. Here, we adapt our high-throughput live virus microneutralisation assay for SARS-CoV-2, benchmark report responsiveness cohort of older (>65yo) community dwelling adults (n=73), after the adjuvanted 2021-22...

10.1101/2024.09.13.24313549 preprint EN cc-by medRxiv (Cold Spring Harbor Laboratory) 2024-09-14

Abstract SARS-CoV-2 has been proposed to encode ORF10 as the 3’ terminal gene in viral genome. However, potential role and even existence of a functional product subject debate. There are significant structural features genomic RNA that could, by themselves, explain retention nucleotide sequences without need for protein product. To explore this question further we made two recombinant viruses, firstly control virus (WT) based on genome sequence original Wuhan isolate with inclusion early...

10.1101/2023.08.04.551973 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2023-08-07

Abstract Coronaviruses pose a permanent risk of outbreaks, with three highly pathogenic species and strains (SARS-CoV, MERS-CoV, SARS-CoV-2) having emerged in the last twenty years. Limited antiviral therapies are currently available their efficacy randomized clinical trials enrolling SARS-CoV-2 patients has not been consistent, highlighting need for more potent treatments. We previously showed that cobicistat, clinically approved inhibitor Cytochrome P450-3A (CYP3A), direct activity against...

10.1101/2023.08.23.554463 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-08-23
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