A5079526662- Biofuel production and bioconversion
- Chromosomal and Genetic Variations
- CRISPR and Genetic Engineering
- Plant Gene Expression Analysis
- Genomics and Phylogenetic Studies
- Sugarcane Cultivation and Processing
- Photosynthetic Processes and Mechanisms
- Plant Pathogenic Bacteria Studies
- Microbial Community Ecology and Physiology
- Protist diversity and phylogeny
- Plant Virus Research Studies
- Plant biochemistry and biosynthesis
- Plant Molecular Biology Research
- Insect Resistance and Genetics
- Plant tissue culture and regeneration
- Cocoa and Sweet Potato Agronomy
- Tea Polyphenols and Effects
- Plant Disease Resistance and Genetics
- Marine and coastal plant biology
- Genetic Mapping and Diversity in Plants and Animals
- Microbial Metabolic Engineering and Bioproduction
- Cancer-related molecular mechanisms research
- Banana Cultivation and Research
- Algal biology and biofuel production
- Fungal and yeast genetics research
Fujian Normal University
2018-2025
Agriculture and Food
2024
The University of Queensland
2024
Fujian Agriculture and Forestry University
2012-2022
Modern sugarcanes are polyploid interspecific hybrids, combining high sugar content from Saccharum officinarum with hardiness, disease resistance and ratooning of spontaneum. Sequencing a haploid S. spontaneum, AP85-441, facilitated the assembly 32 pseudo-chromosomes comprising 8 homologous groups 4 members each, bearing 35,525 genes alleles defined. The reduction basic chromosome number 10 to in spontaneum was caused by fissions 2 ancestral chromosomes followed translocations chromosomes....
Ray Ming, Robert Paull, Qingyi Yu and colleagues report the genome sequences of two cultivated pineapple varieties one wild relative. Their analysis supports use as a reference for monocot comparative genomics provides insight into evolution crassulacean acid metabolism photosynthesis. Pineapple (Ananas comosus (L.) Merr.) is most economically valuable crop possessing (CAM), photosynthetic carbon assimilation pathway with high water-use efficiency, second important tropical fruit. We...
Goldfish have been subjected to over 1,000 y of intensive domestication and selective breeding. In this report, we describe a high-quality goldfish genome (2n = 100), anchoring 95.75% contigs into 50 pseudochromosomes. Comparative genomics enabled us disentangle the two subgenomes that resulted from an ancient hybridization event. Resequencing 185 representative variants 16 wild crucian carp revealed origin identified genomic regions shaped by sweeps linked its domestication. Our...
Longan ( Dimocarpus longan Lour.) is an important economic crop widely planted in tropical and subtropical regions, flower fruit development play decisive effects on the yield quality formation. MCM1, AGAMOUS, DEFICIENS, Serum Response Factor (MADS)-box transcription factor family plays roles for flowering time, floral organ identity, plants. However, there no systematic information of MADS-box longan. In this study, 114 genes were identified from genome, phylogenetic analysis divided them...
Abstract Isochrysis galbana is considered an ideal bait for functional foods and nutraceuticals of humans because its high fucoxanthin (Fx) content. However, multi-omics analysis the regulatory networks Fx biosynthesis in I. has not been reported. In this study, we report a high-quality genome assembly LG007, which size 92.73 Mb, with contig N50 6.99 Mb 14,900 protein-coding genes. Phylogenetic confirmed monophyly Haptophyta, sister to Emiliania huxleyi Chrysochromulina tobinii. Evolutionary...
The multi-petal "Hutou" jasmine (Jasminum sambac var. Trifoliatum) is highly valued for bonsai cultivation and landscape design, however, the aroma profile mechanisms underlying floral scent formation remain elusive. In this study, we generate a nearly complete telomere-to-telomere (T2T) genome assembly of (487.45 Mb with contig N50 38.93 Mb). Metabolomic profiling unveils that 16 significantly differential volatiles (SDVs) may play crucial role in flower aroma. Among them, five scented...
Longan (Dimocarpus longan Lour.) is a productive fruit crop with high nutritional and medical value in tropical subtropical regions. The MYB gene family one of the most widespread plant transcription factor (TF) families participating flowering regulation. However, little known about TFs involved process its regulatory network. In this study, total 119 DlR2R3-MYB genes were identified genome phylogenetically grouped into 28 subgroups. groupings supported by highly conserved structures motif...
Huanglongbing (HLB) is a serious citrus disease that threatens the industry. In previous studies, sulfonamide antibiotics and heat treatment suppressed 'Candidatus Liberibacter asiaticus' (Las), but did not completely eliminate Las. Furthermore, there are few reports studying bacterial microbiome of HLB-affected treated by antibiotics. this study, combinations (45°C or 40°C) (sulfathiazole sodium–STZ, sulfadimethoxine sodium—SDX) were applied to citrus. The following thermotherapy and/or...
Papaya is a productive and nutritious tropical fruit. Ringspot Virus (PRSV) the most devastating pathogen threatening papaya production worldwide. Development of transgenic resistant varieties effective strategy to control this disease. However, little known about genome-wide functional changes induced by particle bombardment transformation. We conducted transcriptome sequencing PRSV SunUp its susceptible progenitor Sunset compare transcriptional in young healthy leaves prior infection with...
F2 and recombinant inbred lines (RILs) populations are very commonly used in plant genetic mapping studies. Although genome-wide markers like single nucleotide polymorphisms (SNPs) can be readily identified by a wide array of methods, accurate genotype calling remains challenging, especially for heterozygous loci missing data due to low sequencing coverage per individual. Therefore, we developed Genotype-Corrector, program that corrects calls imputes improve the accuracy mapping....
Ethanol tolerance involves complex interactions of several genes in the Saccharomyces cerevisiae genome that encodes proteins are subunits SAGA (Spt-Ada-Gcn5-acetyltransferase) complex, particularly those interact with TATA-binding protein. Global transcription machinery engineering has been used to reprogram levels multiple change cellular phenotypes important for technological applications by altering key error-prone polymerase chain reaction (epPCR) mutations. In this study, we produced...
Sugarcane has a large, complex, polyploid genome that hindered the progress of genomic research and molecular marker-assisted selection. The user-friendly SSR markers have attracted much attention owing to their ideal genetic attributes, but these were not characterized developed at genome-wide scale due lack high-quality chromosome-level assembled sugarcane genomes previously. In this present study, total 744,305 361,638 candidate SSRs identified from S. officinarum spontaneum. To verify...
Structural variants (SVs) are a type of genetic variation that contribute substantially to phenotypic diversity and evolution. Further study SVs will help us understand the influence associated with tea quality stress resistance provide new insight into plant breeding improvement research. However, have not been thoroughly discovered in genomes. Herein, we constructed large-scale SV map across population 107 resequenced genomes, including both ancient cultivated plants. A total 44,240...
Sugar beet (Beta vulgaris L.) is an important sugar-producing and energy crop worldwide. The sugar pure line IMA1 independently bred by Chinese scientists a standard diploid parent material that widely used in hybrid-breeding programs. In this study, high-quality, chromosome-level genome assembly for IMA1was conducted, 99.1% of sequences were assigned to nine chromosomes. A total 35,003 protein-coding genes annotated, with 91.56% functionally annotated public databases. Compared previously...