Mark M. Fukuda

ORCID: 0000-0001-5337-8937
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About
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Research Areas
  • Malaria Research and Control
  • Mosquito-borne diseases and control
  • Computational Drug Discovery Methods
  • Drug-Induced Hepatotoxicity and Protection
  • Influenza Virus Research Studies
  • HIV/AIDS drug development and treatment
  • Trypanosoma species research and implications
  • Viral Infections and Vectors
  • Viral Infections and Outbreaks Research
  • Travel-related health issues
  • Zoonotic diseases and public health
  • Drug Transport and Resistance Mechanisms
  • Immune Response and Inflammation
  • Vector-borne infectious diseases
  • Hemoglobinopathies and Related Disorders
  • Neonatal Health and Biochemistry
  • Research on Leishmaniasis Studies
  • Epilepsy research and treatment
  • HIV Research and Treatment
  • Data-Driven Disease Surveillance
  • Animal Disease Management and Epidemiology
  • HIV, Drug Use, Sexual Risk
  • Infectious Encephalopathies and Encephalitis
  • interferon and immune responses
  • Pharmaceutical Quality and Counterfeiting

Armed Forces Research Institute of Medical Science
2013-2024

University of Oxford
2023

Centre for Human Genetics
2023

Institute of Medical Sciences
2017

University of Florida
2015

Armed Forces Health Surveillance Center
2011-2013

United States Army
2007-2010

Centre National de la Recherche Scientifique
2009

Hôpital de la Timone
2009

Medical University of Vienna
2006-2007

The recent emergence of artemisinin-resistant Plasmodium falciparum malaria in western Cambodia could threaten prospects for elimination. Identification the genetic basis resistance would provide tools molecular surveillance, aiding efforts to contain resistance. Clinical trials artesunate efficacy were conducted Bangladesh, northwestern Thailand near Myanmar border, and at two sites Cambodia. Parasites collected from trial participants genotyped 8,079 single nucleotide polymorphisms (SNPs)...

10.1073/pnas.1211205110 article EN Proceedings of the National Academy of Sciences 2012-12-17
Ambroise D. Ahouidi Mozam Ali Jacob Almagro‐Garcia Alfred Amambua‐Ngwa Chanaki Amaratunga and 95 more Roberto Amato Lucas Amenga–Etego Ben Andagalu Tim Anderson Voahangy Andrianaranjaka Tobias O. Apinjoh Cristina V. Ariani Elizabeth A. Ashley Sarah Auburn Gordon A. Awandare Hâmpaté Ba Vito Baraka Alyssa E. Barry Philip Bejon Gwladys Bertin Maciej F. Boni Steffen Borrmann Teun Bousema OraLee H. Branch Peter C. Bull George B. J. Busby Thanat Chookajorn Kesinee Chotivanich Antoine Claessens David J. Conway Alister Craig Umberto D’Alessandro Souleymane Dama Nicholas Day Brigitte Denis Mahamadou Diakité Abdoulaye Djimdé Christiane Dolecek Arjen M. Dondorp Chris Drakeley Eleanor Drury Patrick Duffy Diego F. Echeverry Thomas G. Egwang Berhanu Erko Rick M. Fairhurst Abdul Faiz Caterina Fanello Mark M. Fukuda Dionicia Gamboa Anita Ghansah Lemu Golassa Sónia Gonçalves William L. Hamilton G. L. Abby Harrison Lee Hart Christa Henrichs Tran Tinh Hien Catherine A. Hill Abraham Hodgson Christina Hubbart Mallika Imwong Deus S. Ishengoma Scott A. Jackson Chris Jacob Ben Jeffery Anna E. Jeffreys Kimberly J. Johnson Dushyanth Jyothi Claire Kamaliddin Edwin Kamau Mihir Kekre Krzysztof Henryk Kluczynski Theerarat Kochakarn Abibatou Konaté Dominic Kwiatkowski Myat Phone Kyaw Pharath Lim Chanthap Lon Kovana Marcel Loua Oumou Maïga‐Ascofaré Claudio Malangone Magnus Manske Jutta Marfurt Kevin Marsh Mayfong Mayxay Alistair Miles Olivo Miotto Victor A. Mobegi Olugbenga Ayodeji Mokuolu Jacqui Montgomery Ivo Müeller Paul N. Newton Thuy Nguyen Thuy-Nhien Nguyen Harald Noedl François Nosten Rintis Noviyanti Alexis Nzila Lynette Isabella Ochola‐Oyier

MalariaGEN is a data-sharing network that enables groups around the world to work together on genomic epidemiology of malaria. Here we describe new release curated genome variation data 7,000 Plasmodium falciparum samples from partner studies in 28 malaria-endemic countries. High-quality genotype calls 3 million single nucleotide polymorphisms (SNPs) and short indels were produced using standardised analysis pipeline. Copy number variants associated with drug resistance structural cause...

10.12688/wellcomeopenres.16168.1 preprint EN cc-by Wellcome Open Research 2021-02-24
Muzamil Mahdi Abdel Hamid Mohamed Hassan Abdelraheem Desmond Omane Acheampong Ambroise D. Ahouidi Mozam Ali and 95 more Jacob Almagro‐Garcia Alfred Amambua‐Ngwa Chanaki Amaratunga Lucas Amenga–Etego Ben Andagalu Tim Anderson Voahangy Andrianaranjaka Ifeyinwa Aniebo Enoch Aninagyei Felix Ansah Patrick Ansah Tobias O. Apinjoh Paulo Arnaldo Elizabeth A. Ashley Sarah Auburn Gordon A. Awandare Hâmpaté Ba Vito Baraka Alyssa E. Barry Philip Bejon Gwladys Bertin Maciej F. Boni Steffen Borrmann Teun Bousema Marielle Karine Bouyou-Akotet OraLee H. Branch Peter C. Bull H K Cheah Keobouphaphone Chindavongsa Thanat Chookajorn Kesinee Chotivanich Antoine Claessens David J. Conway Vladimir Corredor Erin Courtier Alister Craig Umberto D’Alessandro Souleymane Dama Nicholas Day Brigitte Denis Mehul Dhorda Mahamadou Diakité Abdoulaye Djimdé Christiane Dolecek Arjen M. Dondorp Seydou Doumbia Chris Drakeley Eleanor Drury Patrick Duffy Diego F. Echeverry Thomas G. Egwang Sónia Maria Enosse Berhanu Erko Rick M. Fairhurst Abdul Faiz Caterina Fanello Mark Fleharty Matthew Forbes Mark M. Fukuda Dionicia Gamboa Anita Ghansah Lemu Golassa Sónia Gonçalves G. L. Abby Harrison Sara A. Healy Jason A. Hendry Anastasia Hernández-Koutoucheva Tran Tinh Hien Catherine A. St. Hill Francis Hombhanje Amanda Hott Ye Htut Mazza Hussein Mallika Imwong Deus S. Ishengoma Scott A. Jackson Chris Jacob Julia Jeans Kimberly J. Johnson Claire Kamaliddin Edwin Kamau Jon Keatley Theerarat Kochakarn Drissa Konaté Abibatou Konaté Aminatou Koné Dominic Kwiatkowski Myat Phone Kyaw Dennis E. Kyle Mara Lawniczak Samuel K. Lee Martha Lemnge Pharath Lim Chanthap Lon Kovana Marcel Loua

<ns3:p>We describe the MalariaGEN Pf7 data resource, seventh release of <ns3:italic>Plasmodium falciparum</ns3:italic> genome variation from network. It comprises over 20,000 samples 82 partner studies in 33 countries, including several malaria endemic regions that were previously underrepresented. For first time we include dried blood spot sequenced after selective whole amplification, necessitating new methods to genotype copy number variations. We identify a large newly emerging...

10.12688/wellcomeopenres.18681.1 preprint EN cc-by Wellcome Open Research 2023-01-16

Background. Increasing rates of failure artemisinin-based combination therapy have highlighted the possibility emerging artemisinin resistance along Thai-Cambodian border. We used an integrated in vivo-in vitro approach to assess presence western Cambodia. This article provides additional data from a clinical trial that has been published The New England Journal Medicine. Methods. Ninety-four adult patients Battambang Province, Cambodia, who presented with uncomplicated falciparum malaria...

10.1086/657120 article EN Clinical Infectious Diseases 2010-10-28

Malaria elimination will be possible only with serious attempts to address asymptomatic infection and chronic by both Plasmodium falciparum vivax. Currently available drugs that can completely clear a human of P. vivax (known as "radical cure"), reduce transmission malaria parasites, are those in the 8-aminoquinoline drug family, such primaquine. Unfortunately, people glucose-6-phosphate dehydrogenase (G6PD) deficiency risk having severe adverse reactions if exposed these at certain doses....

10.1186/1475-2875-12-391 article EN cc-by Malaria Journal 2013-11-04

Abstract Human gingival fibroblasts (HGFs), a predominant cell type in tooth-supporting structure, are presently recognized for their active role the innate immune response. They produce variety of inflammatory cytokines response to microbial components such as LPS from key periodontal pathogen, Porphyromonas gingivalis. In this study, we demonstrated that HGFs expressed mRNA TLRs 1, 2, 3, 4, 5, 6, and 9, but not 7, 8, 10. Stimulation with highly purified TLR2 ligand (P. gingivalis LPS),...

10.4049/jimmunol.178.2.1151 article EN The Journal of Immunology 2007-01-15

Amplified copy number in the plasmepsin II/III genes within Plasmodium falciparum has been associated with decreased sensitivity to piperaquine. To examine this association and test whether additional loci might also contribute, we performed a genome-wide study of ex vivo P. susceptibility DNA from 183 samples collected primarily Cambodia was genotyped at 33716 single nucleotide polymorphisms (SNPs). Linear mixed models random forests were used estimate associations between parasite...

10.1093/infdis/jix334 article EN The Journal of Infectious Diseases 2017-07-13

A simple double-site sandwich enzyme-linked immunosorbent assay (ELISA) for Plasmodium falciparum in vitro drug sensitivity tests based on measuring histidine-rich protein 2 (HRP2) is presented. The ELISA uses two commercial monoclonal antibodies and provides a drastically cheaper alternative to the test kits previously used HRP2 test. establish perform. comparable results very closely match those obtained with (R(2) = 0.979; P < 0.001; mean log difference at 50% inhibitory concentration 0.07).

10.1128/aac.49.8.3575-3577.2005 article EN Antimicrobial Agents and Chemotherapy 2005-07-27

Background The emergence of artemisinin resistance has raised concerns that the most potent antimalarial drug may be under threat. currently recommended daily dose artesunate (AS) is 4 mg/kg, and administered for 3 days together with a partner drug. This study investigated impact different AS doses on clinical parasitological responses in malaria patients from an area known western Cambodia. Methods Adult uncomplicated P. falciparum were randomized into one three 7-day monotherapy regimens:...

10.1371/journal.pone.0019283 article EN cc-by PLoS ONE 2011-05-13
Ambroise D. Ahouidi Mozam Ali Jacob Almagro‐Garcia Alfred Amambua‐Ngwa Chanaki Amaratunga and 95 more Roberto Amato Lucas Amenga–Etego Ben Andagalu Tim Anderson Voahangy Andrianaranjaka Tobias O. Apinjoh Cristina V. Ariani Elizabeth A. Ashley Sarah Auburn Gordon A. Awandare Hâmpaté Ba Vito Baraka Alyssa E. Barry Philip Bejon Gwladys Bertin Maciej F. Boni Steffen Borrmann Teun Bousema OraLee H. Branch Peter C. Bull George B. J. Busby Thanat Chookajorn Kesinee Chotivanich Antoine Claessens David J. Conway Alister Craig Umberto D’Alessandro Souleymane Dama Nicholas Day Brigitte Denis Mahamadou Diakité Abdoulaye Djimdé Christiane Dolecek Arjen M. Dondorp Chris Drakeley Eleanor Drury Patrick Duffy Diego F. Echeverry Thomas G. Egwang Berhanu Erko Rick M. Fairhurst Abdul Faiz Caterina Fanello Mark M. Fukuda Dionicia Gamboa Anita Ghansah Lemu Golassa Sónia Gonçalves William L. Hamilton G. L. Abby Harrison Lee Hart Christa Henrichs Tran Tinh Hien Catherine A. Hill Abraham Hodgson Christina Hubbart Mallika Imwong Deus S. Ishengoma Scott A. Jackson Chris Jacob Ben Jeffery Anna E. Jeffreys Kimberly J. Johnson Dushyanth Jyothi Claire Kamaliddin Edwin Kamau Mihir Kekre Krzysztof Henryk Kluczynski Theerarat Kochakarn Abibatou Konaté Dominic Kwiatkowski Myat Phone Kyaw Pharath Lim Chanthap Lon Kovana Marcel Loua Oumou Maïga‐Ascofaré Claudio Malangone Magnus Manske Jutta Marfurt Kevin Marsh Mayfong Mayxay Alistair Miles Olivo Miotto Victor A. Mobegi Olugbenga Ayodeji Mokuolu Jacqui Montgomery Ivo Müeller Paul N. Newton Thuy Nguyen Thuy-Nhien Nguyen Harald Noedl François Nosten Rintis Noviyanti Alexis Nzila Lynette Isabella Ochola‐Oyier

<ns3:p>MalariaGEN is a data-sharing network that enables groups around the world to work together on genomic epidemiology of malaria. Here we describe new release curated genome variation data 7,000 <ns3:italic>Plasmodium falciparum</ns3:italic> samples from MalariaGEN partner studies in 28 malaria-endemic countries. High-quality genotype calls 3 million single nucleotide polymorphisms (SNPs) and short indels were produced using standardised analysis pipeline. Copy number variants associated...

10.12688/wellcomeopenres.16168.2 preprint EN cc-by Wellcome Open Research 2021-07-13

Abstract There is worldwide concern that the avian influenza H5N1 virus, with a mortality rate of &amp;gt;50%, might cause next pandemic. Unlike most other infections, infection causes systemic disease. The underlying mechanisms for this effect are still unclear. In study, we investigate interplay between and human dendritic cells (DC). We showed virus can infect replicate in monocyte-derived blood myeloid DC, leading to cell death. These results suggest escapes viral-specific immunity,...

10.4049/jimmunol.179.8.5220 article EN The Journal of Immunology 2007-10-15

Human gingival epithelial cells (HGECs) are continually exposed to oral bacteria and other harmful agents. Their responses stimuli critical in maintaining periodontal homeostasis. The aim of this study was investigate the modulating effect cigarette smoke extract (CSE) on innate immune HGECs.Toll-like receptor (TLR) expression HGECs determined by reverse transcriptase-polymerase chain reaction (RT-PCR). CSE or nicotine antimicrobial peptide human beta-defensin-2 (hBD-2) pro-inflammatory...

10.1111/j.1600-0765.2008.01153.x article EN Journal of Periodontal Research 2009-03-13

Estimates of Plasmodium falciparum migration may inform strategies for malaria elimination. Here we elucidate fine-scale parasite population structure and infer recent across Southeast Asia using identity-by-descent (IBD) approaches based on genome-wide single nucleotide polymorphisms called in 1722 samples from 54 districts. IBD estimates are consistent with isolation-by-distance. We observe greater sharing larger segments between artemisinin-resistant parasites versus sensitive parasites,...

10.1038/s41467-019-10121-3 article EN cc-by Nature Communications 2019-06-17

A hospital-based study was conducted along the Thai-Myanmar border to provide greater knowledge of causes febrile illness and determine what zoonotic vector-borne emerging infectious diseases might be present. total 613 adults were enrolled from June 1999 March 2002. Cases classified based on clinical findings laboratory results. An etiologic diagnosis made for 48% subjects. Malaria most common diagnosis, accounting 25% subjects, with two-thirds Plasmodium falciparum. Serologic evidence...

10.4269/ajtmh.2006.74.108 article EN American Journal of Tropical Medicine and Hygiene 2006-01-01

Because antimalarial drug resistance is spreading, there an urgent need for new combination treatments malaria, which kills >1 million people every year. Azithromycin a macrolide antibiotic that particularly attractive as because of its safety in children and the extensive experience with use during pregnancy.We undertook randomized, controlled, 28-day inpatient trial involving patients acute, uncomplicated Plasmodium falciparum malaria. We compared efficacy 2 azithromycin-artesunate...

10.1086/508175 article EN Clinical Infectious Diseases 2006-10-20

Enzyme-linked immunosorbent assays (ELISAs) allow for the testing of large numbers samples within a short time frame. We tested sensitivity and specificity histidine-rich protein 2 (HRP2)-based, commercially available ELISA antigen detection assay Plasmodium falciparum (Malaria Antigen CELISA; Cellabs, Sydney, Australia). A total 700 whole blood obtained from symptomatic outpatients malaria clinics along Thai–Myanmar border were relative to blinded duplicate expert microscopy adjusted with...

10.4269/ajtmh.2006.75.1205 article EN American Journal of Tropical Medicine and Hygiene 2006-12-01

Intrinsic resistance of Plasmodium falciparum is clearly a major determinant the clinical failure antimalarial drugs. However, complex interactions between host, parasite and drug obscure ability to define in vivo. The vitro susceptibility assay determines ex-vivo growth presence serial concentrations and, thus, eliminates host effects, such as metabolism immunity. Although sensitivity various antimalarials provided by test provides an important indicator intrinsic susceptibility, there are...

10.1186/1475-2875-6-120 article EN cc-by Malaria Journal 2007-09-06

Fears of emerging artemisinin resistance in western Cambodia have prompted a series clinical trials investigating whether slow responses to antimalarial treatment can be overcome by increasing doses drug.Patients with uncomplicated malaria were allocated 1 3 oral artesunate monotherapy regimens (2, 4, or 6 mg/kg/day for 7 days) and observed 42 days. A safety measures, including complete blood count on days 0, 3, 6, 14, was implemented because lack data these experimental doses.After doses,...

10.1086/657402 article EN Clinical Infectious Diseases 2010-11-11

Despite widespread coverage of the emergence artemisinin resistance, relatively little is known about parasite populations responsible. The use PCR genotyping around highly polymorphic Plasmodium falciparum msp1, msp2 and glurp genes has become well established both to describe variability in alleles within a population parasites, as classify treatment outcome cases recurrent disease. primary objective was assess minority clones during seven days artesunate (AS) location with resistance. An...

10.1186/1475-2875-12-403 article EN cc-by Malaria Journal 2013-11-09

ABSTRACT Azithromycin when used in combination with faster-acting antimalarials has proven efficacious treating Plasmodium falciparum malaria phase 2 clinical trials. The aim of this study was to establish optimal ratios for azithromycin either dihydroartemisinin or quinine, determine the correlates vitro drug sensitivity these compounds, and assess cross-sensitivity patterns. Seventy-three fresh P. isolates originating from patients western border regions Thailand were successfully tested...

10.1128/aac.01023-06 article EN Antimicrobial Agents and Chemotherapy 2006-11-21
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