Elena Williams

ORCID: 0000-0001-5765-6738
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Research Areas
  • Single-cell and spatial transcriptomics
  • Cancer Genomics and Diagnostics
  • Health, Environment, Cognitive Aging
  • Cell Image Analysis Techniques
  • Genetic factors in colorectal cancer
  • Delphi Technique in Research
  • Evolution and Genetic Dynamics
  • Genomics and Phylogenetic Studies
  • Breast Cancer Treatment Studies
  • EEG and Brain-Computer Interfaces
  • RNA and protein synthesis mechanisms
  • Bat Biology and Ecology Studies
  • Cancer Immunotherapy and Biomarkers
  • Pancreatic and Hepatic Oncology Research
  • Gene expression and cancer classification
  • Mosquito-borne diseases and control
  • Lung Cancer Treatments and Mutations
  • Rabies epidemiology and control
  • Cancer Cells and Metastasis
  • CRISPR and Genetic Engineering
  • Neural dynamics and brain function
  • Visual perception and processing mechanisms
  • Immune Cell Function and Interaction

Genomics England
2022-2025

University of Cambridge
2020-2024

MRC Laboratory of Molecular Biology
2023-2024

Medical Research Council
2023

Cancer Research UK Cambridge Center
2021-2022

IIT@MIT
2021

McGovern Institute for Brain Research
2021

Engineering Arts (United States)
2021

Allen Institute
2021

Howard Hughes Medical Institute
2021

10.1038/s43018-020-0026-6 article EN Nature Cancer 2020-02-17
Emma Laks Andrew McPherson Hans Zahn Daniel Lai Adi Steif and 95 more Jazmine Brimhall Justina Biele Beixi Wang Tehmina Masud Jerome Ting Diljot Grewal Cydney Nielsen Samantha Leung Viktoria Bojilova Maia A. Smith Oleg Golovko Steven S.S. Poon Peter Eirew Farhia Kabeer Teresa Ruiz de Algara So Ra Lee M. Jafar Taghiyar Curtis Huebner Jessica Ngo Tim Hon Man Chan Spencer Vatrt-Watts Pascale Walters Nafis Abrar Sophia Chan Matt Wiens Lauren Martin R. Wilder Scott T. Michael Underhill Elizabeth A. Chavez Christian Steidl Daniel Da Costa Yussanne Ma Robin Coope Richard Corbett Stephen Pleasance Richard A. Moore Andrew J. Mungall Colin Mar Fergus Cafferty Karen A. Gelmon Stephen Chia Marco A. Marra Carl L. Hansen Sohrab P. Shah Samuel Aparício Gregory J. Hannon Giorgia Battistoni Dario Bressan Ian G. Cannell Hannah Casbolt Cristina Jauset Tatjana Kovačević Claire M. Mulvey Fiona Nugent Marta Ribes Isabella Pearsall Fatime Qosaj Kirsty Sawicka Sophia A. Wild Elena Williams Samuel Aparício Emma Laks Yangguang Li Ciara H. O’Flanagan Austin Smith Teresa Ruíz Shankar Balasubramanian Maximillian Lee Bernd Bodenmiller Marcel Burger Laura Kuett Sandra Tietscher Jonas Windager Edward S. Boyden Shahar Alon Yi Cui Amauche Emenari Dan Goodwin Emmanouil D. Karagiannis Anubhav Sinha Asmamaw T. Wassie Carlos Caldas Alejandra Bruna Maurizio Callari Wendy Greenwood Giulia Lerda Yaniv Lubling Alastair Marti Oscar M. Rueda Abigail Shea Owen Harris Robby Becker Flaminia Grimaldi Suvi Harris Sara Lisa Vogl

Accurate measurement of clonal genotypes, mutational processes, and replication states from individual tumor-cell genomes will facilitate improved understanding tumor evolution. We have developed DLP+, a scalable single-cell whole-genome sequencing platform implemented using commodity instruments, image-based object recognition, open source computational methods. Using we generated resource 51,926 matched cell images diverse types including lines, xenografts, diagnostic samples with limited...

10.1016/j.cell.2019.10.026 article EN cc-by-nc-nd Cell 2019-11-01

Whole-genome sequencing (WGS) permits comprehensive cancer genome analyses, revealing mutational signatures, imprints of DNA damage and repair processes that have arisen in each patient's cancer. We performed signature analyses on 12,222 WGS tumor-normal matched pairs, from patients recruited via the UK National Health Service. contrasted our results to two independent datasets, International Cancer Genome Consortium (ICGC) Hartwig Foundation, involving 18,640 cancers total. Our add 40...

10.1126/science.abl9283 article EN Science 2022-04-21
Sohrab Salehi Farhia Kabeer Nicholas Ceglia Mirela Andronescu Marc Williams and 95 more Kieran R. Campbell Tehmina Masud Beixi Wang Justina Biele Jazmine Brimhall David Gee Hakwoo Lee Jerome Ting Allen W. Zhang Hoa Tran Ciara H. O’Flanagan Fatemeh Dorri Nicole Rusk Teresa Ruiz de Algara So Ra Lee Brian Yu Chieh Cheng Peter Eirew Takako Kono Jenifer Pham Diljot Grewal Daniel Lai Richard A. Moore Andrew J. Mungall Marco A. Marra Gregory J. Hannon Giorgia Battistoni Dario Bressan Ian G. Cannell Hannah Casbolt Atefeh Fatemi Cristina Jauset Tatjana Kovačević Claire M. Mulvey Fiona Nugent Marta Ribes Isabella Pearsall Fatime Qosaj Kirsty Sawicka Sophia A. Wild Elena Williams Emma Laks Yangguang Li Ciara H. O’Flanagan Austin Smith Teresa Ruíz Daniel Lai Andrew Roth Shankar Balasubramanian Maximillian Lee Bernd Bodenmiller Marcel Burger Laura Kuett Sandra Tietscher Jonas Windhager Edward S. Boyden Shahar Alon Yi Cui Amauche Emenari Dan Goodwin Emmanouil D. Karagiannis Anubhav Sinha Asmamaw T. Wassie Carlos Caldas Alejandra Bruna Maurizio Callari Wendy Greenwood Giulia Lerda Yaniv Eyal-Lubling Oscar M. Rueda Abigail Shea Owen Harris Robby Becker Flaminia Grimaldi Suvi Harris Sara Lisa Vogl Joanna Weselak Johanna A. Joyce Spencer S. Watson Ignacio Vázquez-Garćıa Simon Tavaré Khanh N. Dinh Eyal Fisher Russell Kunes N. A. Walton Mohammad Al Sa’d Nick Chornay A. Dariush E. A. González-Solares Carlos González‐Fernández A. Yoldaş Neil S. Millar Tristan Whitmarsh Xiaowei Zhuang Jean Fan Hsuan Lee

10.1038/s41586-021-03648-3 article EN Nature 2021-06-23
Tyler Funnell Ciara H. O’Flanagan Marc Williams Andrew McPherson Steven McKinney and 95 more Farhia Kabeer Hakwoo Lee Sohrab Salehi Ignacio Vázquez-Garćıa Hongyu Shi Emily L Leventhal Tehmina Masud Peter Eirew Damian Yap Allen W. Zhang Jamie Lim Beixi Wang Jazmine Brimhall Justina Biele Jerome Ting Vinci Au Michael Van Vliet Yifei Liu Sean Beatty Daniel Lai Jenifer Pham Diljot Grewal Douglas N. Abrams Eliyahu Havasov Samantha Leung Viktoria Bojilova Richard A. Moore Nicole Rusk Florian Uhlitz Nicholas Ceglia Adam C. Weiner Elena Zaikova J. Maxwell Douglas Dmitriy Zamarin Britta Weigelt Sarah H. Kim Arnaud Da Cruz Paula Jorge S. Reis‐Filho Spencer D. Martin Yangguang Li Hongxia Xu Teresa Ruiz de Algara So Ra Lee Viviana Cerda Llanos David G. Huntsman Jessica N. McAlpine Gregory J. Hannon Georgia Battistoni Dario Bressan Ian G. Cannell Hannah Casbolt Cristina Jauset Tatjana Kovačević Claire M. Mulvey Fiona Nugent Marta Ribes Isabella Pearson Fatime Qosaj Kirsty Sawicka Sophia A. Wild Elena Williams Emma Laks Austin Smith Daniel Lai Andrew Roth Shankar Balasubramanian Maximilian Lee Bernd Bodenmiller Marcel Burger Laura Kuett Sandra Tietscher Jonas Windhager Edward S. Boyden Shahar Alon Yi Cui Amauche Emenari Daniel Goodwin Emmanouil D. Karagiannis Anubhav Sinha Asmamaw T. Wassie Carlos Caldas Alejandra Bruna Maurizio Callari Wendy Greenwood Giulia Lerda Yaniv Eyal-Lubling Oscar M. Rueda Abigail Shea Owen Harris Robby Becker Flaminia Grimaldo Suvi Harris Sara Lisa Vogl Johanna A. Joyce Spencer S. Watson

How cell-to-cell copy number alterations that underpin genomic instability

10.1038/s41586-022-05249-0 article EN cc-by Nature 2022-10-26

Abstract The execution of goal-oriented behaviours requires a spatially coherent alignment between sensory and motor maps. current model for sensorimotor transformation in the superior colliculus relies on topographic mapping static spatial receptive fields onto movement endpoints 1–6 . Here, to experimentally assess validity this canonical alignment, we dissected visuo-motor network performed vivo intracellular extracellular recordings across layers, restrained unrestrained conditions, both...

10.1038/s41586-024-07619-2 article EN cc-by Nature 2024-07-03
Dimitra Georgopoulou Maurizio Callari Oscar M. Rueda Abigail Shea Alistair Martin and 95 more Agnese Giovannetti Fatime Qosaj A. Dariush Suet‐Feung Chin Larissa S. Carnevalli Elena Provenzano Wendy Greenwood Giulia Lerda Elham Esmaeilishirazifard Martin O’Reilly Violeta Serra Dario Bressan H. Raza Ali M. Al Sa’d Shahar Alon Samuel Aparício Giorgia Battistoni Shankar Balasubramanian Robert O. Becker Bernd Bodenmiller E. S. Boyden Dario Bressan Alejandra Bruna Marcel Burger Carlos Caldas Maurizio Callari Ian G. Cannell Helen Casbolt N. Chornay Yi Cui A. Dariush K. Dinh A. Emenari Y. Eyal-Lubling Jean Fan Ali Fatemi Edward A. Fisher E. A. González-Solares C. Gónzalez-Fernández Douglas C. Goodwin Wendy Greenwood Francesco Grimaldi Gregory J. Hannon Owen Harris Shelley Harris Cristina Jauset Johanna A. Joyce Emmanouil D. Karagiannis Tatjana Kovačević Laura Kuett Russell Kunes Yoldaş A. Küpcü Daniel Lai Emma Laks Hsuan Lee M. Lee Giulia Lerda Y. Li Andrew McPherson Neal L. Millar Claire M. Mulvey Fiona Nugent Ciara H. O’Flanagan Marta Pàez‐Ribes I. Pearsall Fatime Qosaj Andrew Roth Oscar M. Rueda Tamara Ruiz Kirsty Sawicka Leonardo A. Sepúlveda Sohrab P. Shah Abigail Shea Anubhav Sinha Adrian L. Smith S. Tavaré Sandra Tietscher Ignacio Vázquez-Garćıa Siegfried Vogl N. A. Walton Asmamaw T. Wassie Spencer S. Watson Joanna Weselak Sonja Wild Elena Williams Jonas Windhager Tristan Whitmarsh C. Xia Ping Zheng Xiaowei Zhuang Gordon B. Mills H. Raza Ali Sabina S. Cosulich Gregory J. Hannon Alejandra Bruna

The heterogeneity of breast cancer plays a major role in drug response and resistance has been extensively characterized at the genomic level. Here, single-cell mass cytometry (BCMC) panel is optimized to identify cell phenotypes their oncogenic signalling states biobank patient-derived tumour xenograft (PDTX) models representing diversity human cancer. BCMC identifies 13 cellular (11 2 murine), associated with both subtypes specific features. Pre-treatment phenotypic composition determinant...

10.1038/s41467-021-22303-z article EN cc-by Nature Communications 2021-03-31

Abstract Background Whole-genome sequencing (WGS) of cancers is becoming an accepted component oncological care, and NHS England currently rolling out WGS for all children with cancer. This approach was piloted during the 100,000 genomes (100 K) project. Here we share experience East Genomic Medicine Centre (East-GMC), reporting feasibility clinical utility centralised individual locally. Methods Non-consecutive solid tumours were recruited into pilot 100 K project at our Centre. Variant...

10.1038/s41416-022-01788-5 article EN cc-by British Journal of Cancer 2022-04-21
Dario Bressan N. A. Walton Gregory J. Hannon Mohammad Al Sa’d Bruno Albuquerque and 95 more H. Raza Ali Martina Alini Samuel Aparício Heather Ashmore Thomas J. Ashmore Vinci Au Shankar Balasubramanian Caroline Baril Giorgia Battistoni Sean Beatty Robby Becker Bernd Bodenmiller Alina Bollhagen Carla Boquetale Edward S. Boyden Dario Bressan Alejandra Bruna Marcel Burger Carlos Caldas Maurizio Callari Ian G. Cannell Hannah Casbolt Nick Chornay Nikki Coutts A. Dariush Lauren Deighton Khanh N. Dinh Natalie Duncan Yaniv Eyal-Lubling Ilaria Falciatori Jean Fan Atefeh Fatemi Debarati Ghosh Carlos González‐Fernández E. A. González-Solares Wendy Greenwood Flaminia Grimaldi Gregory J. Hannon Owen Harris Suvi Harris Nicole Hemmer Kui Hua Muhammad Irfan Cristina Jauset Johanna A. Joyce Tatjana Kovačević Laura Kuett Russell Kunes A. Yoldaş Daniel Lai Emma Laks Hsuan Lee Max Lee Giulia Lerda Yangguang Li J. Lovell Yangning Lu John C. Marioni Andrew McPherson Neil S. Millar Alireza Molaeinezhad Claire M. Mulvey Natasha Narayanan João C. F. Nogueira Fiona Nugent Ciara H. O’Flanagan Marta Ribes Isabella Pearsall Sarah M. Pearsall Brett Pryor Fatime Qosaj Clare Rebbeck Andrew Roth Oscar M. Rueda Teresa Ruíz Kirsty Sawicka Leonardo A. Sepúlveda Sohrab P. Shah Abigail Shea Anubhav Sinha Austin Smith Leigh M. Smith Simon Tavaré Ignacio Vázquez-Garćıa Sara Lisa Vogl N. A. Walton Spencer S. Watson Joanna Weselak Tristan Whitmarsh Sophia A. Wild Elena Williams Jonas Windhager Chenglong Xia Chee Ying Sia Chi Zhang

Summary: The Imaging and Molecular Annotation of Xenografts Tumors Cancer Grand Challenges team was set up with the objective developing “next generation” pathology cancer research by using a combination single-cell spatial omics tools to produce 3D molecularly annotated maps tumors. Its activities overlapped, in some cases catalyzed, revolution biology that saw new technologies being deployed investigate roles tumor heterogeneity micro-environment. See related article Stratton et al., p. 22...

10.1158/2159-8290.cd-24-1686 article EN Cancer Discovery 2025-01-13
Dario Bressan N. A. Walton Gregory J. Hannon Mohammad Al Sa’d Bruno Albuquerque and 95 more H. Raza Ali Martina Alini Samuel Aparício Heather Ashmore Thomas J. Ashmore Vinci Au Shankar Balasubramanian Caroline Baril Giorgia Battistoni Sean Beatty Robby Becker Bernd Bodenmiller Alina Bollhagen Carla Boquetale Edward S. Boyden Dario Bressan Alejandra Bruna Marcel Burger Carlos Caldas Maurizio Callari Ian G. Cannell Hannah Casbolt Nick Chornay Nikki Coutts A. Dariush Lauren Deighton Khanh N. Dinh Natalie Duncan Yaniv Eyal-Lubling Ilaria Falciatori Jean Fan Atefeh Fatemi Debarati Ghosh Carlos González‐Fernández E. A. González-Solares Wendy Greenwood Flaminia Grimaldi Gregory J. Hannon Owen Harris Suvi Harris Nicole Hemmer Kui Hua Muhammad Irfan Cristina Jauset Johanna A. Joyce Tatjana Kovačević Laura Kuett Russell Kunes A. Yoldaş Daniel Lai Emma Laks Hsuan Lee Max Lee Giulia Lerda Yangguang Li J. Lovell Yangning Lu John C. Marioni Andrew McPherson Neil S. Millar Alireza Molaeinezhad Claire M. Mulvey Natasha Narayanan João C. F. Nogueira Fiona Nugent Ciara H. O’Flanagan Marta Ribes Isabella Pearsall Sarah M. Pearsall Brett Pryor Fatime Qosaj Clare Rebbeck Andrew Roth Oscar M. Rueda Teresa Ruíz Kirsty Sawicka Leonardo A. Sepúlveda Sohrab P. Shah Abigail Shea Anubhav Sinha Austin Smith Leigh M. Smith Simon Tavaré Ignacio Vázquez-Garćıa Sara Lisa Vogl N. A. Walton Spencer S. Watson Joanna Weselak Tristan Whitmarsh Sophia A. Wild Elena Williams Jonas Windhager Chenglong Xia Chee Ying Sia Chi Zhang

<p>IMAXT Consortium Author List</p>

10.1158/2159-8290.28193715 preprint EN cc-by 2025-01-13
Dario Bressan N. A. Walton Gregory J. Hannon Mohammad Al Sa’d Bruno Albuquerque and 95 more H. Raza Ali Martina Alini Samuel Aparício Heather Ashmore Thomas J. Ashmore Vinci Au Shankar Balasubramanian Caroline Baril Giorgia Battistoni Sean Beatty Robby Becker Bernd Bodenmiller Alina Bollhagen Carla Boquetale Edward S. Boyden Dario Bressan Alejandra Bruna Marcel Burger Carlos Caldas Maurizio Callari Ian G. Cannell Hannah Casbolt Nick Chornay Nikki Coutts A. Dariush Lauren Deighton Khanh N. Dinh Natalie Duncan Yaniv Eyal-Lubling Ilaria Falciatori Jean Fan Atefeh Fatemi Debarati Ghosh Carlos González‐Fernández E. A. González-Solares Wendy Greenwood Flaminia Grimaldi Gregory J. Hannon Owen Harris Suvi Harris Nicole Hemmer Kui Hua Muhammad Irfan Cristina Jauset Johanna A. Joyce Tatjana Kovačević Laura Kuett Russell Kunes A. Yoldaş Daniel Lai Emma Laks Hsuan Lee Max Lee Giulia Lerda Yangguang Li J. Lovell Yangning Lu John C. Marioni Andrew McPherson Neil S. Millar Alireza Molaeinezhad Claire M. Mulvey Natasha Narayanan João C. F. Nogueira Fiona Nugent Ciara H. O’Flanagan Marta Ribes Isabella Pearsall Sarah M. Pearsall Brett Pryor Fatime Qosaj Clare Rebbeck Andrew Roth Oscar M. Rueda Teresa Ruíz Kirsty Sawicka Leonardo A. Sepúlveda Sohrab P. Shah Abigail Shea Anubhav Sinha Austin Smith Leigh M. Smith Simon Tavaré Ignacio Vázquez-Garćıa Sara Lisa Vogl N. A. Walton Spencer S. Watson Joanna Weselak Tristan Whitmarsh Sophia A. Wild Elena Williams Jonas Windhager Chenglong Xia Chee Ying Sia Chi Zhang

<div>Summary:<p>The Imaging and Molecular Annotation of Xenografts Tumors Cancer Grand Challenges team was set up with the objective developing “next generation” pathology cancer research by using a combination single-cell spatial omics tools to produce 3D molecularly annotated maps tumors. Its activities overlapped, in some cases catalyzed, revolution biology that saw new technologies being deployed investigate roles tumor heterogeneity micro-environment.</p><p><a...

10.1158/2159-8290.c.7623345 preprint EN 2025-01-13
Dario Bressan N. A. Walton Gregory J. Hannon Mohammad Al Sa’d Bruno Albuquerque and 95 more H. Raza Ali Martina Alini Samuel Aparício Heather Ashmore Thomas J. Ashmore Vinci Au Shankar Balasubramanian Caroline Baril Giorgia Battistoni Sean Beatty Robby Becker Bernd Bodenmiller Alina Bollhagen Carla Boquetale Edward S. Boyden Dario Bressan Alejandra Bruna Marcel Burger Carlos Caldas Maurizio Callari Ian G. Cannell Hannah Casbolt Nick Chornay Nikki Coutts A. Dariush Lauren Deighton Khanh N. Dinh Natalie Duncan Yaniv Eyal-Lubling Ilaria Falciatori Jean Fan Atefeh Fatemi Debarati Ghosh Carlos González‐Fernández E. A. González-Solares Wendy Greenwood Flaminia Grimaldi Gregory J. Hannon Owen Harris Suvi Harris Nicole Hemmer Kui Hua Muhammad Irfan Cristina Jauset Johanna A. Joyce Tatjana Kovačević Laura Kuett Russell Kunes A. Yoldaş Daniel Lai Emma Laks Hsuan Lee Max Lee Giulia Lerda Yangguang Li J. Lovell Yangning Lu John C. Marioni Andrew McPherson Neil S. Millar Alireza Molaeinezhad Claire M. Mulvey Natasha Narayanan João C. F. Nogueira Fiona Nugent Ciara H. O’Flanagan Marta Ribes Isabella Pearsall Sarah M. Pearsall Brett Pryor Fatime Qosaj Clare Rebbeck Andrew Roth Oscar M. Rueda Teresa Ruíz Kirsty Sawicka Leonardo A. Sepúlveda Sohrab P. Shah Abigail Shea Anubhav Sinha Austin Smith Leigh M. Smith Simon Tavaré Ignacio Vázquez-Garćıa Sara Lisa Vogl N. A. Walton Spencer S. Watson Joanna Weselak Tristan Whitmarsh Sophia A. Wild Elena Williams Jonas Windhager Chenglong Xia Chee Ying Sia Chi Zhang

<p>IMAXT Consortium Author List</p>

10.1158/2159-8290.28228999 preprint EN cc-by 2025-01-17

Abstract Mapping the molecular identities and functions of cells within their spatial context is key to understanding complex interplay between tissue neighbourhoods. A wide range methods have recently enabled profiling cellular anatomical contexts, some offering single-cell resolution. These use different barcoding schemes encode either location or identity target molecules. However, all these technologies face a trade-off resolution, depth profiling, scalability. Here, we present B...

10.1101/2024.05.20.595040 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2024-05-22
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