David Eichmann

ORCID: 0000-0003-3150-8758
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About
Contact & Profiles
Research Areas
  • Software Engineering Research
  • Scientific Computing and Data Management
  • COVID-19 Clinical Research Studies
  • Advanced Database Systems and Queries
  • Web Data Mining and Analysis
  • Biomedical Text Mining and Ontologies
  • Semantic Web and Ontologies
  • Software Reliability and Analysis Research
  • Topic Modeling
  • COVID-19 and healthcare impacts
  • Software Testing and Debugging Techniques
  • Long-Term Effects of COVID-19
  • Video Analysis and Summarization
  • scientometrics and bibliometrics research
  • Natural Language Processing Techniques
  • Advanced Text Analysis Techniques
  • Advanced Image and Video Retrieval Techniques
  • COVID-19 Impact on Reproduction
  • Advanced Software Engineering Methodologies
  • Research Data Management Practices
  • Logic, programming, and type systems
  • Data Management and Algorithms
  • Distributed and Parallel Computing Systems
  • Text and Document Classification Technologies
  • Data Stream Mining Techniques

Collaborative Research Group
2021

Cohort (United Kingdom)
2021

University of Iowa
2010-2020

State Library of Iowa
2015-2016

The University of Texas Health Science Center at Houston
2009

West Virginia University
1992-2003

University of Houston - Clear Lake
1993-2002

University of Houston
1995

Houston Institute for Clinical Research
1992

Computing Center
1981

Coronavirus disease 2019 (COVID-19) poses societal challenges that require expeditious data and knowledge sharing. Though organizational clinical are abundant, these largely inaccessible to outside researchers. Statistical, machine learning, causal analyses most successful with large-scale beyond what is available in any given organization. Here, we introduce the National COVID Cohort Collaborative (N3C), an open science community focused on analyzing patient-level from many centers.The...

10.1093/jamia/ocaa196 article EN cc-by-nc Journal of the American Medical Informatics Association 2020-08-14
Tellen D. Bennett Richard A. Moffitt Janos Hajagos Benjamin Amor Adit Anand and 95 more Mark M. Bissell Katie R. Bradwell Carolyn Bremer James Brian Byrd Alina Denham Peter DeWitt Davera Gabriel Brian T. Garibaldi Andrew T. Girvin Justin Guinney Elaine Hill Stephanie Hong Hunter Jimenez Ramakanth Kavuluru Kristin Kostka Harold P. Lehmann Eli B. Levitt Sandeep K. Mallipattu Amin Manna Julie A. McMurry Michele Morris John Muschelli Andrew J. Neumann Matvey B. Palchuk Emily Pfaff Zhenglong Qian Nabeel Qureshi Seth Russell Heidi Spratt Anita Walden Andrew E. Williams Jacob T. Wooldridge Yun Jae Yoo Xiaohan Tanner Zhang Richard L. Zhu Christopher P. Austin Joel Saltz Kenneth Gersing Melissa Haendel Christopher G. Chute Joel Gagnier Siqing Hu Kanchan Lota Sarah E. Maidlow David A. Hanauer Kevin J. Weatherwax Nikhila Gandrakota Rishikesan Kamaleswaran Greg S. Martin Jingjing Qian Jason E. Farley Patricia A. Francis Dazhi Jiao Hadi Kharrazi Justin Reese Mariam Deacy Usman Ullah Sheikh Jake Y. Chen Michael Quinn Patton T. Bennett Ramsey Jasvinder A. Singh James J. Cimino Jing Su William G. Adams Timothy Q. Duong John B. Buse Jessica Y. Islam Jihad S. Obeid Stéphane M. Meystre Steve Patterson Misha Zemmel Ron Grider A. Pérez Martínez Carlos Antônio do Nascimento Santos Julian Solway Ryan G. Chiu Gerald B. Brown Jia-Feng Cui Sharon X. Liang Kamil Khanipov Jeremy Harper Peter J. Embí David Eichmann Boyd M. Knosp William B. Hillegass Chunlei Wu James R. Aaron Darren W. Henderson Muhammad Gul Tamela Harper Daniel R. Harris Jeffery Talbert Neil Bahroos Steven M. Dubinett Jomol Mathew

The National COVID Cohort Collaborative (N3C) is a centralized, harmonized, high-granularity electronic health record repository that the largest, most representative COVID-19 cohort to date. This multicenter data set can support robust evidence-based development of predictive and diagnostic tools inform clinical care policy.

10.1001/jamanetworkopen.2021.16901 article EN cc-by-nc-nd JAMA Network Open 2021-07-13

Prior observational studies suggest that aspirin use may be associated with reduced mortality in high-risk hospitalized patients COVID-19, but aspirin's efficacy moderate COVID-19 is not well studied.To assess whether early lower odds of in-hospital COVID-19.Observational cohort study 112 269 enrolled from January 1, 2020, through September 10, 2021, at 64 health systems the United States participating National Institute Health's COVID Cohort Collaborative (N3C).Aspirin within first day...

10.1001/jamanetworkopen.2022.3890 article EN cc-by-nc-nd JAMA Network Open 2022-03-24

10.1007/s11948-014-9532-1 article EN Science and Engineering Ethics 2014-03-25

10.1016/s0169-7552(94)90151-1 article EN Computer Networks and ISDN Systems 1994-11-01

A case is presented for the use of conventional and interface slicing as enabling mechanisms numerous reverse engineering reengineering tasks. The authors first discuss applicability to algorithm extraction design recovery at statement-level granularity. They then present show how it provides similar capabilities module-level Module a general term collection subprograms, possibly with information hiding mechanisms: It includes but not limited Ada packages. Component refers module in reuse...

10.5555/257572.257682 article EN International Conference on Software Engineering 1993-05-21

This paper proposes an active learning approach using language model statistics to detect Wikipedia vandalism. is a popular and influential collaborative information system. The nature of authoring, as well the high visibility its content, have exposed articles Vandalism defined malicious editing intended compromise integrity content articles. Extensive manual efforts are being made combat vandalism automated alleviate laborious process needed.

10.1145/1772938.1772942 article EN 2010-04-27

Purpose To examine the impact of a personal health record (PHR) on medication-use safety among older adults.

10.1136/amiajnl-2013-002284 article EN Journal of the American Medical Informatics Association 2013-12-10

RNA interference (RNAi) serves as a powerful and widely used gene silencing tool for basic biological research is being developed therapeutic avenue to suppress disease-causing genes. However, the specificity safety of RNAi strategies remains under scrutiny because small inhibitory RNAs (siRNAs) induce off-target silencing. Currently, tools available designing siRNAs are biased toward efficacy opposed specificity. Prior work from our laboratory others' supports potential design highly...

10.1093/nar/gks797 article EN cc-by-nc Nucleic Acids Research 2012-08-30

10.1016/0169-7552(95)00107-3 article EN Computer Networks and ISDN Systems 1995-12-01
Tianchu Lyu Chen Liang Jihong Liu Peiyin Hung Jiajia Zhang and 95 more Berry A. Campbell Nadia Ghumman Bankole Olatosi Neşet Hikmet Manting Zhang Honggang Yi Xiaoming Li Adam B. Wilcox Adam M. Lee Alexis Graves Alfred Anzalone Amin Manna Amit Saha Amy L. Olex Andrea Zhou Andrew E. Williams Andrew M. Southerland Andrew T. Girvin Anita Walden Anjali Sharathkumar Benjamin Amor Benjamin Bates Brian Hendricks Brijesh Patel Caleb Alexander Carolyn T. Bramante Cavin Ward‐Caviness Charisse Madlock‐Brown Christine Suver Christopher G. Chute Christopher Dillon Chunlei Wu Clare Schmitt Cliff Takemoto Dan Housman Davera Gabriel David Eichmann Diego R. Mazzotti Donald D. Brown Eilis Boudreau Elaine Hill Elizabeth Zampino Emily Carlson Marti Emily Pfaff Evan French Farrukh M. Koraishy Federico Mariona Fred Prior George Sokos Greg S. Martin Harold P. Lehmann Heidi Spratt Hemalkumar B. Mehta Hongfang Liu Hythem Sidky J W Awori Hayanga Jami Pincavitch Jaylyn Clark Jeremy Harper Jessica Y. Islam Jin Ge Joel Gagnier Joel Saltz Joel Saltz Johanna Loomba John B. Buse Jomol Mathew Joni L. Rutter Julie A. McMurry Justin Guinney Justin Starren Karen Crowley Katie R. Bradwell Kellie M Walters Ken Wilkins Kenneth Gersing Kenrick Cato Kimberly Murray Kristin Kostka Lavance Northington Lee Allan Pyles Leonie Misquitta Lesley Cottrell Lili Portilla Mariam Deacy Mark M. Bissell Marshall Clark Mary Emmett Mary Saltz Matvey B. Palchuk Melissa Haendel Meredith E. Adams Meredith Temple-O’Connor Michael G. Kurilla Michele Morris

10.1016/j.ajog.2023.02.022 article EN American Journal of Obstetrics and Gynecology 2023-03-29
Sara Jones Katie R. Bradwell Lauren Chan Julie A. McMurry Courtney Olson‐Chen and 95 more Jessica Tarleton Kenneth J. Wilkins Victoria Ly Saad Ljazouli Qiuyuan Qin Emily A. Groene Yan Kwan Lau Catherine Xie Yu-Han Kao Michael Liebman Federico Mariona Anup P. Challa Li Li Sarah J. Ratcliffe Melissa Haendel Rena C. Patel Elaine Hill Adam B. Wilcox Adam M Lee Alexis Graves Alfred Anzalone Amin Manna Amit Saha Amy L. Olex Andrea Zhou Andrew E. Williams Andrew M. Southerland Andrew T. Girvin Anita Walden Anjali Sharathkumar Benjamin Amor Benjamin Bates Brian Hendricks Brijesh Patel Caleb Alexander Carolyn T. Bramante Cavin Ward‐Caviness Charisse Madlock‐Brown Christine Suver Christopher G. Chute Christopher Dillon Chunlei Wu Clare Schmitt Cliff Takemoto Dan Housman Davera Gabriel David Eichmann Diego R. Mazzotti Donald D. Brown Eilis Boudreau Elizabeth Zampino Emily Carlson Marti Emily Pfaff Evan French Farrukh M. Koraishy Federico Mariona Fred Prior George Sokos Greg S. Martin Harold P. Lehmann Heidi Spratt Hemalkumar B. Mehta Hongfang Liu Hythem Sidky J.W. Awori Hayanga Jami Pincavitch Jaylyn Clark Jeremy Harper Jessica Y. Islam Jin Ge Joel Gagnier Joel Saltz Johanna Loomba John B. Buse Jomol Mathew Joni L. Rutter Justin Starren Karen Crowley Katie R. Bradwell Kellie M Walters Ken Wilkins Kenneth Gersing Kenrick Cato Kimberly Murray Kristin Kostka Lavance Northington Lee Allan Pyles Leonie Misquitta Lesley Cottrell Lili Portilla Mariam Deacy Mark M. Bissell Marshall Clark Mary Emmett Mary Saltz

Abstract Objectives To define pregnancy episodes and estimate gestational age within electronic health record (EHR) data from the National COVID Cohort Collaborative (N3C). Materials Methods We developed a comprehensive approach, named Hierarchy rule-based episode Inference integrated with Pregnancy Progression Signatures (HIPPS), applied it to EHR in N3C (January 1, 2018–April 7, 2022). HIPPS combines: (1) an extension of previously published algorithm, (2) novel algorithm detect...

10.1093/jamiaopen/ooad067 article EN cc-by JAMIA Open 2023-07-04

Article Cross-language information retrieval with the UMLS metathesaurus Share on Authors: David Eichmann School of Library and Information Science, The University Iowa IowaView Profile , Miguel E. Ruiz Padmini Srinivasan Authors Info & Claims SIGIR '98: Proceedings 21st annual international ACM conference Research development in retrievalAugust 1998 Pages 72–80https://doi.org/10.1145/290941.290959Online:01 August 1998Publication History 29citation763DownloadsMetricsTotal Citations29Total...

10.1145/290941.290959 article EN 1998-08-01

Research-networking tools use data-mining and social networking to enable expertise discovery, matchmaking collaboration, which are important facets of team science translational research. Several commercial academic platforms have been built, many institutions deployed these products help their investigators find local collaborators. Recent studies, though, shown the growing importance multiuniversity teams in science. Unfortunately, lack a standard data-exchange model resistance...

10.1136/amiajnl-2011-000200 article EN Journal of the American Medical Informatics Association 2011-10-29

The past 2 decades have witnessed the emergence of information as a scientific discipline and growth schools around world. We analyzed current state iSchool community in U.S. with special focus on evolution community. conducted our study from perspectives acquiring talents producing research, including analysis faculty members' educational backgrounds, research topics, hiring network among iSchools. Applying text mining techniques social to data various sources, revealed how gradually built...

10.1002/asi.23751 article EN Journal of the Association for Information Science and Technology 2016-11-18
Jason Thomas Randi E. Foraker Noa Zamstein Jon D. Morrow Philip Payne and 93 more Adam B. Wilcox Melissa Haendel Christopher G. Chute Kenneth Gersing Anita Walden Melissa Haendel Tellen D. Bennett Christopher G. Chute David Eichmann Justin Guinney Warren A. Kibbe Hongfang Liu Philip Payne Emily Pfaff Peter N. Robinson Joel Saltz Heidi Spratt Justin Starren Christine Suver Adam B. Wilcox Andrew E. Williams Chunlei Wu Christopher G. Chute Emily Pfaff Davera Gabriel Stephanie Hong Kristin Kostka Harold P. Lehmann Richard A. Moffitt Michele Morris Matvey B. Palchuk Xiaohan Tanner Zhang Richard L. Zhu Emily Pfaff Benjamin Amor Mark M. Bissell Marshall Clark Andrew T. Girvin Stephanie Hong Kristin Kostka Adam M Lee Robert Miller Michele Morris Matvey B. Palchuk Kellie M Walters Anita Walden Yooree Chae Connor Cook Alexandra Dest Racquel R Dietz Thomas M. Dillon Patricia A. Francis Rafael Fuentes Alexis Graves Julie A. McMurry Andrew J. Neumann Shawn T. O′Neil Usman Ullah Sheikh Andréa M Volz Elizabeth Zampino Christopher P. Austin Kenneth Gersing Samuel Bozzette Mariam Deacy Nicole Garbarini Michael G. Kurilla Sam Michael Joni L. Rutter Meredith Temple-O’Connor Benjamin Amor Mark M. Bissell Katie R. Bradwell Andrew T. Girvin Amin Manna Nabeel Qureshi Mary Saltz Christine Suver Christopher G. Chute Melissa Haendel Julie A. McMurry Andréa M Volz Anita Walden Carolyn T. Bramante Jeremy Harper Wenndy Hernandez Farrukh M. Koraishy Federico Mariona Saidulu Mattapally Amit Saha Satyanarayana Vedula Yujuan Fu Nisha Mathews Ofer Mendelevitch

Abstract Objective This study sought to evaluate whether synthetic data derived from a national coronavirus disease 2019 (COVID-19) dataset could be used for geospatial and temporal epidemic analyses. Materials Methods Using an original (n = 1 854 968 severe acute respiratory syndrome 2 tests) its derivative, we compared key indicators of COVID-19 community spread through analysis aggregate zip code-level curves, patient characteristics outcomes, distribution tests by code, indicator counts...

10.1093/jamia/ocac045 article EN Journal of the American Medical Informatics Association 2022-03-29
Miranda Kunz Kollin W. Rott Eric Hurwitz Ken M. Kunisaki Jing Sun and 95 more Kenneth J. Wilkins Jessica Y. Islam Rena C. Patel Sandra E. Safo Adam B. Wilcox Adam M. Lee Alexis Graves Alfred Anzalone Amin Manna Amit Saha Amy L. Olex Andrea Zhou Andrew E. Williams Andrew M. Southerland Andrew T. Girvin Anita Walden Anjali Sharathkumar Benjamin Amor Benjamin Bates Brian Hendricks Brijesh Patel Caleb Alexander Carolyn T. Bramante Cavin Ward‐Caviness Charisse Madlock‐Brown Christine Suver Christopher G. Chute Christopher Dillon Chunlei Wu Clare Schmitt Cliff Takemoto Dan Housman Davera Gabriel David Eichmann Diego R. Mazzotti Donald D. Brown Eilis Boudreau Elaine Hill Elizabeth Zampino Emily Carlson Marti Emily Pfaff Evan French Farrukh M. Koraishy Federico Mariona Fred Prior George Sokos Greg S. Martin Harold P. Lehmann Heidi Spratt Hemalkumar B. Mehta Hongfang Liu Hythem Sidky J.W. Awori Hayanga Jami Pincavitch Jaylyn Clark Jeremy Harper Jessica Y. Islam Jin Ge Joel Gagnier Joel Saltz Joel Saltz Johanna Loomba John B. Buse Jomol Mathew Joni L. Rutter Julie A. McMurry Justin Guinney Justin Starren Karen Crowley Katie R. Bradwell Kellie M Walters Ken Wilkins Kenneth Gersing Kenrick Cato Kimberly Murray Kristin Kostka Lavance Northington Lee Allan Pyles Leonie Misquitta Lesley Cottrell Lili Portilla Mariam Deacy Mark M. Bissell Marshall Clark Mary Emmett Mary Saltz Matvey B. Palchuk Melissa Haendel Meredith E. Adams Meredith Temple-O’Connor Michael G. Kurilla Michele Morris Nabeel Qureshi Nasia Safdar Nicole Garbarini

10.1007/s10461-024-04266-6 article EN AIDS and Behavior 2024-02-07

A case is presented for the use of conventional and interface slicing as enabling mechanisms numerous reverse engineering reengineering tasks. The authors first discuss applicability to algorithm extraction design recovery at statement-level granularity. They then present show how it provides similar capabilities module-level Module a general term collection subprograms, possibly with information hiding mechanisms: It includes but not limited Ada packages. Component refers module in reuse...

10.1109/icse.1993.346015 article EN Proceedings of the 44th International Conference on Software Engineering 2002-12-30

OpenVIVO is a free and open hosted semantic web platform to anyone that gathers shares data about scholarship around the world. OpenVIVO, based on VIVO source platform, provides transparent access scholarly work of its participants. demonstrates use persistent identifiers, automatic real-time ingest ecosystem metadata, VIVO-ISF related ontologies, attribution work, publication reuse – all critical components presenting, preserving, tracking scholarship. The system was created by...

10.3389/frma.2017.00012 article EN cc-by Frontiers in Research Metrics and Analytics 2018-03-01

10.1016/0169-7552(94)90142-2 article EN Computer Networks and ISDN Systems 1994-11-01
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