Johanna Loomba

ORCID: 0000-0003-3673-5423
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About
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Research Areas
  • Long-Term Effects of COVID-19
  • COVID-19 Clinical Research Studies
  • COVID-19 and healthcare impacts
  • Machine Learning in Healthcare
  • COVID-19 diagnosis using AI
  • Chronic Obstructive Pulmonary Disease (COPD) Research
  • Artificial Intelligence in Healthcare
  • Neurological disorders and treatments
  • Scientific Computing and Data Management
  • COVID-19 and Mental Health
  • Thermal Regulation in Medicine
  • Emergency and Acute Care Studies
  • Inflammasome and immune disorders
  • Sepsis Diagnosis and Treatment
  • Acute Ischemic Stroke Management
  • Advanced MRI Techniques and Applications
  • COVID-19 Impact on Reproduction
  • Healthcare cost, quality, practices
  • Obstructive Sleep Apnea Research
  • Research Data Management Practices
  • Asthma and respiratory diseases
  • Heart Rate Variability and Autonomic Control
  • Glioma Diagnosis and Treatment
  • SARS-CoV-2 and COVID-19 Research
  • Maternal and fetal healthcare

University of Virginia
2013-2024

Collaborative Research Group
2024

Cohort (United Kingdom)
2024

Translational Research Institute
2021-2022

Neurological Surgery
2013-2019

University of Virginia Health System
2019

Recent advances have enabled delivery of high-intensity focused ultrasound through the intact human cranium with magnetic resonance imaging (MRI) guidance. This preliminary study investigates use transcranial MRI-guided thalamotomy for treatment essential tremor.

10.1056/nejmoa1300962 article EN New England Journal of Medicine 2013-08-15

Immune dysregulation is characteristic of the more severe stages SARS-CoV-2 infection. Understanding mechanisms by which immune system contributes to COVID-19 severity may open new avenues treatment. Here, we report that elevated IL-13 was associated with need for mechanical ventilation in 2 independent patient cohorts. In addition, patients who acquired while prescribed Dupilumab, a mAb blocks and IL-4 signaling, had less disease. SARS-CoV-2–infected mice, neutralization reduced death...

10.1172/jci.insight.150107 article EN cc-by JCI Insight 2021-06-29

Abstract Background Naming a newly discovered disease is difficult process; in the context of COVID-19 pandemic and existence post-acute sequelae SARS-CoV-2 infection (PASC), which includes long COVID, it has proven especially challenging. Disease definitions assignment diagnosis code are often asynchronous iterative. The clinical definition our understanding underlying mechanisms COVID still flux, deployment an ICD-10-CM for USA took nearly 2 years after patients had begun to describe their...

10.1186/s12916-023-02737-6 article EN cc-by BMC Medicine 2023-02-16

Abstract Long COVID, or complications arising from COVID-19 weeks after infection, has become a central concern for public health experts. The United States National Institutes of Health founded the RECOVER initiative to better understand long COVID. We used electronic records available through COVID Cohort Collaborative characterize association between SARS-CoV-2 vaccination and diagnosis. Among patients with infection August 1, 2021 January 31, 2022, we defined two cohorts using distinct...

10.1038/s41467-023-38388-7 article EN cc-by Nature Communications 2023-05-22

MR imaging-guided focused sonography surgery is a new stereotactic technique that uses high-intensity to heat and ablate tissue. The goal of this study was describe imaging findings pre- post-ventralis intermedius nucleus lesioning by as treatment for essential tremor determine whether there an association between these features the clinical response sonography.Fifteen patients with medication-refractory prospectively gave consent; were enrolled in single-site, FDA-approved pilot trial;...

10.3174/ajnr.a3808 article EN cc-by American Journal of Neuroradiology 2013-12-26

Abstract Objective In response to COVID-19, the informatics community united aggregate as much clinical data possible characterize this new disease and reduce its impact through collaborative analytics. The National COVID Cohort Collaborative (N3C) is now largest publicly available HIPAA limited dataset in US history with over 6.4 million patients a testament partnership of 100 organizations. Materials Methods We developed pipeline for ingesting, harmonizing, centralizing from 56...

10.1093/jamia/ocab217 article EN cc-by-nc Journal of the American Medical Informatics Association 2021-09-23

Abstract Background More than one-third of individuals experience post-acute sequelae SARS-CoV-2 infection (PASC, which includes long-COVID). The objective is to identify risk factors associated with PASC/long-COVID diagnosis. Methods This was a retrospective case–control study including 31 health systems in the United States from National COVID Cohort Collaborative (N3C). 8,325 PASC (defined by presence International Classification Diseases, version 10 code U09.9 or long-COVID clinic visit)...

10.1186/s12889-023-16916-w article EN cc-by BMC Public Health 2023-10-25

Abstract Study Objectives Obstructive sleep apnea (OSA) has been associated with more severe acute coronavirus disease-2019 (COVID-19) outcomes. We assessed OSA as a potential risk factor for Post-Acute Sequelae of SARS-CoV-2 (PASC). Methods the impact preexisting on probable PASC in adults and children using electronic health record data from multiple research networks. Three networks within REsearching COVID to Enhance Recovery initiative (PCORnet Adult, PCORnet Pediatric, National Cohort...

10.1093/sleep/zsad126 article EN SLEEP 2023-05-11

Although the COVID-19 pandemic has persisted for over 3 years, reinfections with SARS-CoV-2 are not well understood. We aim to characterize reinfection, understand development of Long COVID after and compare severity reinfection initial infection.

10.1038/s43856-024-00539-2 article EN cc-by Communications Medicine 2024-07-11

Abstract Immune dysregulation is characteristic of the more severe stages SARS-CoV-2 infection. Understanding mechanisms by which immune system contributes to COVID-19 severity may open new avenues treatment. Here we report that elevated interleukin-13 (IL-13) was associated with need for mechanical ventilation in two independent patient cohorts. In addition, patients who acquired while prescribed Dupilumab had less disease. infected mice, IL-13 neutralization reduced death and disease...

10.1101/2020.06.18.20134353 preprint EN cc-by-nc-nd medRxiv (Cold Spring Harbor Laboratory) 2020-06-20

Abstract Accurate stratification of patients with post-acute sequelae SARS-CoV-2 infection (PASC, or long COVID) would allow precision clinical management strategies. However, the natural history COVID is incompletely understood and characterized by an extremely wide range manifestations that are difficult to analyze computationally. In addition, generalizability machine learning classification COVID-19 outcomes has rarely been tested. We present a method for computationally modeling PASC...

10.1101/2022.05.24.22275398 preprint EN cc-by-nc medRxiv (Cold Spring Harbor Laboratory) 2022-05-25

Although the COVID-19 pandemic has persisted for over 2 years, reinfections with SARS-CoV-2 are not well understood. We use electronic health record (EHR)-based study cohort from National COVID Cohort Collaborative (N3C) as part of NIH Researching to Enhance Recovery (RECOVER) Initiative characterize reinfection, understand development Long after and compare severity reinfection initial infection. validate previous findings incidence (5.9%), occurrence most during Omicron epoch, evidence...

10.1101/2023.01.03.22284042 preprint EN cc-by-nc-nd medRxiv (Cold Spring Harbor Laboratory) 2023-01-05

Object Intravenous sodium nitrite has been shown to prevent and reverse cerebral vasospasm in a primate model of subarachnoid hemorrhage (SAH). The present Phase IIA dose-escalation study was conducted determine the compound's safety humans with aneurysmal SAH establish its pharmacokinetics during 14-day infusion. Methods In 18 patients (3 cohorts 6 each) from ruptured aneurysm, patients) or saline infused. Sodium were delivered intravenously for 14 days, scheme used nitrite, maximum dose 64...

10.3171/2013.3.jns13266 article EN Journal of neurosurgery 2013-05-24

Naming a newly discovered disease is difficult process; in the context of COVID-19 pandemic and existence post-acute sequelae SARS-CoV-2 infection (PASC), which includes Long COVID, it has proven especially challenging. Disease definitions assignment diagnosis code are often asynchronous iterative. The clinical definition our understanding underlying mechanisms COVID still flux, deployment an ICD-10-CM for US took nearly two years after patients had begun to describe their condition. Here we...

10.1101/2022.04.18.22273968 preprint EN cc-by-nc-nd medRxiv (Cold Spring Harbor Laboratory) 2022-04-19
Tianchu Lyu Chen Liang Jihong Liu Peiyin Hung Jiajia Zhang and 95 more Berry A. Campbell Nadia Ghumman Bankole Olatosi Neşet Hikmet Manting Zhang Honggang Yi Xiaoming Li Adam B. Wilcox Adam M. Lee Alexis Graves Alfred Anzalone Amin Manna Amit Saha Amy L. Olex Andrea Zhou Andrew E. Williams Andrew M. Southerland Andrew T. Girvin Anita Walden Anjali Sharathkumar Benjamin Amor Benjamin Bates Brian Hendricks Brijesh Patel Caleb Alexander Carolyn T. Bramante Cavin Ward‐Caviness Charisse Madlock‐Brown Christine Suver Christopher G. Chute Christopher Dillon Chunlei Wu Clare Schmitt Cliff Takemoto Dan Housman Davera Gabriel David Eichmann Diego R. Mazzotti Donald D. Brown Eilis Boudreau Elaine Hill Elizabeth Zampino Emily Carlson Marti Emily Pfaff Evan French Farrukh M. Koraishy Federico Mariona Fred Prior George Sokos Greg S. Martin Harold P. Lehmann Heidi Spratt Hemalkumar B. Mehta Hongfang Liu Hythem Sidky J W Awori Hayanga Jami Pincavitch Jaylyn Clark Jeremy Harper Jessica Y. Islam Jin Ge Joel Gagnier Joel Saltz Joel Saltz Johanna Loomba John B. Buse Jomol Mathew Joni L. Rutter Julie A. McMurry Justin Guinney Justin Starren Karen Crowley Katie R. Bradwell Kellie M Walters Ken Wilkins Kenneth Gersing Kenrick Cato Kimberly Murray Kristin Kostka Lavance Northington Lee Allan Pyles Leonie Misquitta Lesley Cottrell Lili Portilla Mariam Deacy Mark M. Bissell Marshall Clark Mary Emmett Mary Saltz Matvey B. Palchuk Melissa Haendel Meredith E. Adams Meredith Temple-O’Connor Michael G. Kurilla Michele Morris

10.1016/j.ajog.2023.02.022 article EN American Journal of Obstetrics and Gynecology 2023-03-29
Sara Jones Katie R. Bradwell Lauren Chan Julie A. McMurry Courtney Olson‐Chen and 95 more Jessica Tarleton Kenneth J. Wilkins Victoria Ly Saad Ljazouli Qiuyuan Qin Emily A. Groene Yan Kwan Lau Catherine Xie Yu-Han Kao Michael Liebman Federico Mariona Anup P. Challa Li Li Sarah J. Ratcliffe Melissa Haendel Rena C. Patel Elaine Hill Adam B. Wilcox Adam M Lee Alexis Graves Alfred Anzalone Amin Manna Amit Saha Amy L. Olex Andrea Zhou Andrew E. Williams Andrew M. Southerland Andrew T. Girvin Anita Walden Anjali Sharathkumar Benjamin Amor Benjamin Bates Brian Hendricks Brijesh Patel Caleb Alexander Carolyn T. Bramante Cavin Ward‐Caviness Charisse Madlock‐Brown Christine Suver Christopher G. Chute Christopher Dillon Chunlei Wu Clare Schmitt Cliff Takemoto Dan Housman Davera Gabriel David Eichmann Diego R. Mazzotti Donald D. Brown Eilis Boudreau Elizabeth Zampino Emily Carlson Marti Emily Pfaff Evan French Farrukh M. Koraishy Federico Mariona Fred Prior George Sokos Greg S. Martin Harold P. Lehmann Heidi Spratt Hemalkumar B. Mehta Hongfang Liu Hythem Sidky J.W. Awori Hayanga Jami Pincavitch Jaylyn Clark Jeremy Harper Jessica Y. Islam Jin Ge Joel Gagnier Joel Saltz Johanna Loomba John B. Buse Jomol Mathew Joni L. Rutter Justin Starren Karen Crowley Katie R. Bradwell Kellie M Walters Ken Wilkins Kenneth Gersing Kenrick Cato Kimberly Murray Kristin Kostka Lavance Northington Lee Allan Pyles Leonie Misquitta Lesley Cottrell Lili Portilla Mariam Deacy Mark M. Bissell Marshall Clark Mary Emmett Mary Saltz

Abstract Objectives To define pregnancy episodes and estimate gestational age within electronic health record (EHR) data from the National COVID Cohort Collaborative (N3C). Materials Methods We developed a comprehensive approach, named Hierarchy rule-based episode Inference integrated with Pregnancy Progression Signatures (HIPPS), applied it to EHR in N3C (January 1, 2018–April 7, 2022). HIPPS combines: (1) an extension of previously published algorithm, (2) novel algorithm detect...

10.1093/jamiaopen/ooad067 article EN cc-by JAMIA Open 2023-07-04

We previously found that type 2 immunity promotes coronavirus disease 2019 (COVID-19) pathogenesis in a mouse model. To test relevance to human disease, we used electronic health record databases and determined patients on dupilumab (anti-interleukin [IL]-4R monoclonal antibody blocks IL-13 IL-4 signaling) at the time of COVID-19 infection had lower mortality.

10.1093/cid/ciac745 article EN Clinical Infectious Diseases 2022-09-13

OBJECTIVE: To investigate temporal trends and outcomes associated with early antibiotic prescribing in patients hospitalized COVID-19. DESIGN: Retrospective propensity-matched cohort study using the National COVID Cohort Collaborative (N3C) database. SETTING: Sixty-six health systems throughout United States that were contributing to N3C Centers had fewer than 500 admissions their dataset excluded. PATIENTS: Patients COVID-19 included. defined have use if they received at least 3 calendar...

10.1097/ccm.0000000000005901 article EN Critical Care Medicine 2023-05-01
Miranda Kunz Kollin W. Rott Eric Hurwitz Ken M. Kunisaki Jing Sun and 95 more Kenneth J. Wilkins Jessica Y. Islam Rena C. Patel Sandra E. Safo Adam B. Wilcox Adam M. Lee Alexis Graves Alfred Anzalone Amin Manna Amit Saha Amy L. Olex Andrea Zhou Andrew E. Williams Andrew M. Southerland Andrew T. Girvin Anita Walden Anjali Sharathkumar Benjamin Amor Benjamin Bates Brian Hendricks Brijesh Patel Caleb Alexander Carolyn T. Bramante Cavin Ward‐Caviness Charisse Madlock‐Brown Christine Suver Christopher G. Chute Christopher Dillon Chunlei Wu Clare Schmitt Cliff Takemoto Dan Housman Davera Gabriel David Eichmann Diego R. Mazzotti Donald D. Brown Eilis Boudreau Elaine Hill Elizabeth Zampino Emily Carlson Marti Emily Pfaff Evan French Farrukh M. Koraishy Federico Mariona Fred Prior George Sokos Greg S. Martin Harold P. Lehmann Heidi Spratt Hemalkumar B. Mehta Hongfang Liu Hythem Sidky J.W. Awori Hayanga Jami Pincavitch Jaylyn Clark Jeremy Harper Jessica Y. Islam Jin Ge Joel Gagnier Joel Saltz Joel Saltz Johanna Loomba John B. Buse Jomol Mathew Joni L. Rutter Julie A. McMurry Justin Guinney Justin Starren Karen Crowley Katie R. Bradwell Kellie M Walters Ken Wilkins Kenneth Gersing Kenrick Cato Kimberly Murray Kristin Kostka Lavance Northington Lee Allan Pyles Leonie Misquitta Lesley Cottrell Lili Portilla Mariam Deacy Mark M. Bissell Marshall Clark Mary Emmett Mary Saltz Matvey B. Palchuk Melissa Haendel Meredith E. Adams Meredith Temple-O’Connor Michael G. Kurilla Michele Morris Nabeel Qureshi Nasia Safdar Nicole Garbarini

10.1007/s10461-024-04266-6 article EN AIDS and Behavior 2024-02-07

ABSTRACT Background In 2021, we used the National COVID Cohort Collaborative (N3C) as part of NIH RECOVER Initiative to develop a machine learning (ML) pipeline identify patients with high probability having post-acute sequelae SARS-CoV-2 infection (PASC), or Long COVID. However, increased home testing, missing documentation, and reinfections that characterize latter years pandemic necessitate reengineering our original model account for these changes in COVID-19 research landscape. Methods...

10.1101/2023.12.08.23299718 preprint EN cc-by-nc-nd medRxiv (Cold Spring Harbor Laboratory) 2023-12-09
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