Alan Hubbard

ORCID: 0000-0002-3769-0127
Publications
Citations
Views
---
Saved
---
About
Contact & Profiles
Research Areas
  • Child Nutrition and Water Access
  • Advanced Causal Inference Techniques
  • Statistical Methods and Inference
  • Statistical Methods and Bayesian Inference
  • Global Maternal and Child Health
  • Carcinogens and Genotoxicity Assessment
  • Statistical Methods in Clinical Trials
  • Gene expression and cancer classification
  • Parasites and Host Interactions
  • Air Quality and Health Impacts
  • Food Security and Health in Diverse Populations
  • Health disparities and outcomes
  • Birth, Development, and Health
  • Poverty, Education, and Child Welfare
  • Viral gastroenteritis research and epidemiology
  • Trauma and Emergency Care Studies
  • Influenza Virus Research Studies
  • COVID-19 epidemiological studies
  • Genetics, Aging, and Longevity in Model Organisms
  • Malaria Research and Control
  • Health Systems, Economic Evaluations, Quality of Life
  • Health, Environment, Cognitive Aging
  • Epigenetics and DNA Methylation
  • Climate Change and Health Impacts
  • Global Health Care Issues

University of California, Berkeley
2016-2025

Berkeley Public Health Division
2014-2024

University of California System
2000-2024

University of California, San Francisco
2003-2021

University of California, Davis
2018-2021

San Francisco General Hospital
2003-2021

University of California, Los Angeles
2021

University of KwaZulu-Natal
2020

Oregon Health & Science University
2020

University of Colorado Boulder
2020

When trying to learn a model for the prediction of an outcome given set covariates, statistician has many estimation procedures in their toolbox. A few examples these candidate learners are: least squares, angle regression, random forests, and spline regression. Previous articles (van der Laan Dudoit (2003); van et al. (2006); Sinisi (2007)) theoretically validated use cross validation select optimal learner among learners. Motivated by this validation, we propose new method creating...

10.2202/1544-6115.1309 article EN Statistical Applications in Genetics and Molecular Biology 2007-01-16

Two modeling approaches are commonly used to estimate the associations between neighborhood characteristics and individual-level health outcomes in multilevel studies (subjects within neighborhoods). Random effects models (or mixed models) use maximum likelihood estimation. Population average typically a generalized estimating equation (GEE) approach. These methods place of basic regression because residents same may be correlated, thus violating independence assumptions made by traditional...

10.1097/ede.0b013e3181caeb90 article EN Epidemiology 2010-03-18

Certain respiratory tract infections are transmitted through air. Coughing and sneezing by an infected person can emit pathogen-containing particles with diameters less than 10 μ m that reach the alveolar region. Based on our analysis of sparse literature aerosols, we estimated emitted quickly decrease in diameter due to water loss one-half initial values, one cough volume 20 is 6 × 10− 8 mL. The pathogen emission rate from a source case depends frequency expiratory events, respirable...

10.1080/15459620590918466 article EN Journal of Occupational and Environmental Hygiene 2005-02-07

Diarrhoea and growth faltering in early childhood are associated with subsequent adverse outcomes. We aimed to assess whether water quality, sanitation, handwashing interventions alone or combined nutrition reduced diarrhoea faltering.The WASH Benefits Bangladesh cluster-randomised trial enrolled pregnant women from villages rural evaluated outcomes at 1-year 2-years' follow-up. Pregnant geographically adjacent clusters were block-randomised one of seven clusters: chlorinated drinking...

10.1016/s2214-109x(17)30490-4 article EN cc-by The Lancet Global Health 2018-01-29

BackgroundPoor nutrition and exposure to faecal contamination are associated with diarrhoea growth faltering, both of which have long-term consequences for child health. We aimed assess whether water, sanitation, handwashing, interventions reduced or faltering.MethodsThe WASH Benefits cluster-randomised trial enrolled pregnant women from villages in rural Kenya evaluated outcomes at 1 year 2 years follow-up. Geographically-adjacent clusters were block-randomised active control (household...

10.1016/s2214-109x(18)30005-6 article EN cc-by The Lancet Global Health 2018-01-29

Background: Lung and breast cancers are leading causes of cancer death worldwide. Prior exploratory work has shown that patterns biochemical markers have been found in the exhaled breath patients with lung distinguishable from those controls. However, chemical analysis not suitability for individual clinical diagnosis. Methods: The authors used a food reward-based method training 5 ordinary household dogs to distinguish, by scent alone, samples 55 31 83 healthy A correct indication was...

10.1177/1534735405285096 article EN cc-by-nc Integrative Cancer Therapies 2006-02-16

Abstract Accurate estimates of the burden SARS-CoV-2 infection are critical to informing pandemic response. Confirmed COVID-19 case counts in U.S. do not capture total because testing has been primarily restricted individuals with moderate severe symptoms due limited test availability. Here, we use a semi-Bayesian probabilistic bias analysis account for incomplete and imperfect diagnostic accuracy. We estimate 6,454,951 cumulative infections compared 721,245 confirmed cases (1.9% vs. 0.2%...

10.1038/s41467-020-18272-4 article EN cc-by Nature Communications 2020-09-09

Age-related neurodegenerative disease has been mechanistically linked with mitochondrial dysfunction via damage from reactive oxygen species produced within the cell. We determined whether increased oxidative stress could modulate or regulate two of key neurochemical hallmarks Alzheimer's (AD): tau phosphorylation, and ß-amyloid deposition. Mice lacking superoxide dismutase 2 (SOD2) die first week life, develop a complex heterogeneous phenotype arising stress. Treatment these mice catalytic...

10.1371/journal.pone.0000536 article EN cc-by PLoS ONE 2007-06-19

Human aging is associated with skeletal muscle atrophy and functional impairment (sarcopenia). Multiple lines of evidence suggest that mitochondrial dysfunction a major contributor to sarcopenia. We evaluated whether healthy was transcriptional profile reflecting resistance exercise could reverse this signature approximating younger physiological age. Skeletal biopsies from older (N = 25) 26) adult men women were compared using gene expression profiling, subset these related measurements...

10.1371/journal.pone.0000465 article EN cc-by PLoS ONE 2007-05-23

Beneficial effects of massage on tired muscles work through anti-inflammatory and mitochondrial biogenesis pathways.

10.1126/scitranslmed.3002882 article EN Science Translational Medicine 2012-02-01

Enteric infections are common during the first years of life in low-income countries and contribute to growth faltering with long-term impairment health development. Water quality, sanitation, handwashing nutritional interventions can independently reduce enteric faltering. There is little evidence that directly compares effects these individual combined on diarrhoea when delivered infants young children. The objective WASH Benefits study help fill this knowledge gap.WASH includes two...

10.1136/bmjopen-2013-003476 article EN cc-by-nc BMJ Open 2013-08-01

Significance Widely available accurate estimates of malaria exposure are essential for targeting and evaluation public health interventions. Antibody responses to the parasite can provide information on past exposure, but date, most such measurements have been based a small number proteins chosen by convenience rather than utility not provided quantitative an individual’s exposure. Our results generated screening hundreds in children with known histories indicate that few appropriately...

10.1073/pnas.1501705112 article EN public-domain Proceedings of the National Academy of Sciences 2015-07-27

Sustainable Development Goal 2.2-to end malnutrition by 2030-includes the elimination of child wasting, defined as a weight-for-length z-score that is more than two standard deviations below median World Health Organization standards for growth

10.1038/s41586-023-06480-z article EN cc-by Nature 2023-09-13
Jade Benjamin‐Chung Andrew Mertens John M. Colford Alan Hubbard Mark J. van der Laan and 95 more Jeremy Coyle Oleg Sofrygin Weixin Cai Anna Nguyen Nolan N. Pokpongkiat Stephanie Djajadi Anmol Seth Wendy Jilek Esther Jung Esther O. Chung Sonali Rosete Nima S. Hejazi Ivana Malenica Haodong Li Ryan Hafen Vishak Subramoney Jonas Häggström Thea Norman Kenneth H. Brown Parul Christian Benjamin F. Arnold Souheila Abbeddou Linda S. Adair Tahmeed Ahmed Asad Ali Hasmot Ali Per Ashorn Rajiv Bahl Maurício L. Barreto France Bégin Pascal Bessong Maharaj Kishan Bhan Nita Bhandari Santosh K. Bhargava Zulfiqar A Bhutta Robert E. Black Ladaporn Bodhidatta Delia B. Carba Inés González-Casanova William Checkley Jean E. Crabtree Kathryn G. Dewey Christopher Duggan Caroline Fall Abu Syed Golam Faruque Wafaie Fawzi José Quirino da Silva Filho Robert H. Gilman Richard L. Guerrant Rashidul Haque Sonja Y. Hess Eric R. Houpt Jean H. Humphrey Najeeha Talat Iqbal Elizabeth Yakes Jimenez Jacob John Sushil Matthew John Gagandeep Kang Margaret Kosek Michael S. Kramer Alain Labrique Sang Lee Aldo Â. M. Lima Mustafa Mahfuz Tjale Cloupas Mahopo Kenneth Maleta Dharma Manandhar Karim Manji Reynaldo Martorell Sarmila Mazumder Estomih Mduma Venkata Raghava Mohan Sophie E. Moore Ishita Mostafa Robert Ntozini Mzwakhe Emanuel Nyathi Maribel Paredes Olórtegui William A. Petri Prasanna Samuel Premkumar Andrew M. Prentice Najeeb Rahman Harshpal Singh Sachdev Kamran Sadiq Rajiv Sarkar Naomi Saville Saijuddin Shaikh Bhim P. Shrestha Sanjaya K. Shrestha Alberto M. Soares Bakary Sonko Aryeh D. Stein Erling Svensen Sana Syed Fayaz Umrani Honorine Ward

Globally, 149 million children under 5 years of age are estimated to be stunted (length more than 2 standard deviations below international growth standards)

10.1038/s41586-023-06418-5 article EN cc-by Nature 2023-09-13
Andrew Mertens Jade Benjamin‐Chung John M. Colford Jeremy Coyle Mark J. van der Laan and 95 more Alan Hubbard Sonali Rosete Ivana Malenica Nima S. Hejazi Oleg Sofrygin Weixin Cai Haodong Li Anna Nguyen Nolan N. Pokpongkiat Stephanie Djajadi Anmol Seth Esther Jung Esther O. Chung Wendy Jilek Vishak Subramoney Ryan Hafen Jonas Häggström Thea Norman Kenneth H. Brown Parul Christian Benjamin F. Arnold Souheila Abbeddou Linda S. Adair Tahmeed Ahmed Asad Ali Hasmot Ali Per Ashorn Rajiv Bahl Maurício L. Barreto Elodie Becquey France Bégin Pascal Bessong Maharaj Kishan Bhan Nita Bhandari Santosh K. Bhargava Zulfiqar A Bhutta Robert E. Black Ladaporn Bodhidatta Delia B. Carba William Checkley Parul Christian Jean E. Crabtree Kathryn G. Dewey Christopher Duggan Caroline Fall Abu Syed Golam Faruque Wafaie Fawzi José Quirino da Silva Filho Robert H. Gilman Richard L. Guerrant Rashidul Haque S. M. Tafsir Hasan Sonja Y. Hess Eric R. Houpt Jean H. Humphrey Najeeha Talat Iqbal Elizabeth Yakes Jimenez Jacob John Sushil Matthew John Gagandeep Kang Margaret Kosek Michael S. Kramer Alain Labrique Sang Lee Aldo Â. M. Lima Tjale Cloupas Mahopo Kenneth Maleta Dharma Manandhar Karim Manji Reynaldo Martorell Sarmila Mazumder Estomih Mduma Venkata Raghava Mohan Sophie E. Moore Robert Ntozini Mzwakhe Emanuel Nyathi Maribel Paredes Olórtegui Césaire T. Ouédraogo William A. Petri Prasanna Samuel Premkumar Andrew M. Prentice Najeeb Rahman Manuel Ramírez‐Zea Harshpal Singh Sachdev Kamran Sadiq Rajiv Sarkar Monira Sarmin Naomi Saville Saijuddin Shaikh Bhim P. Shrestha Sanjaya K. Shrestha Alberto M. Soares Bakary Sonko Aryeh D. Stein Erling Svensen

Abstract Growth faltering in children (low length for age or low weight length) during the first 1,000 days of life (from conception to 2 years age) influences short-term and long-term health survival 1,2 . Interventions such as nutritional supplementation pregnancy postnatal period could help prevent growth faltering, but programmatic action has been insufficient eliminate high burden stunting wasting low- middle-income countries. Identification windows population subgroups on which focus...

10.1038/s41586-023-06501-x article EN cc-by Nature 2023-09-13

Context:The causal relation between school bullying and psychopathologic behavior has been the focus of substantial debate.Previous studies have failed to garner evidence in either direction, largely because methodologic constraints such as cross-sectional study designs, shared method variance, analytic shortfalls.Objective: To determine direction bullying.Design: Prospective cohort study.Setting: Two Korean middle schools.Participants: A total 1655 seventh-and eighthgrade students were...

10.1001/archpsyc.63.9.1035 article EN Archives of General Psychiatry 2006-09-01

As computational power improves, the application of more advanced machine learning techniques to analysis large genome-wide association (GWA) datasets becomes possible. While most traditional statistical methods can only elucidate main effects genetic variants on risk for disease, certain approaches are particularly suited discover higher order and non-linear effects. One such approach is Random Forests (RF) algorithm. The use RF SNP discovery related human disease has grown in recent years;...

10.1186/1471-2156-11-49 article EN cc-by BMC Genomic Data 2010-06-14

Abstract There are concerns about the health effects of formaldehyde exposure, including carcinogenicity, in light elevated indoor air levels new homes and occupational exposures experienced by workers care, embalming, manufacturing, other industries. Epidemiologic studies suggest that exposure is associated with an increased risk leukemia. However, biological plausibility these findings has been questioned because limited information available on ability to disrupt hematopoietic function....

10.1158/1055-9965.epi-09-0762 article EN Cancer Epidemiology Biomarkers & Prevention 2010-01-01

Lithium (Li(+)) has been used to treat mood affect disorders, including bipolar, for decades. This drug is neuroprotective and several identified molecular targets. However, it a narrow therapeutic range the one or more underlying mechanisms of its action are not understood. Here we describe pharmacogenetic study Li(+) in nematode Caenorhabditis elegans. Exposure at clinically relevant concentrations throughout adulthood increases survival during normal aging (up 46% median increase)....

10.1074/jbc.m705028200 article EN cc-by Journal of Biological Chemistry 2007-10-24
Coming Soon ...