A5100749538- Aquaculture disease management and microbiota
- Genomics and Phylogenetic Studies
- Aquaculture Nutrition and Growth
- Genetic and phenotypic traits in livestock
- Genetic diversity and population structure
- Chromosomal and Genetic Variations
- Identification and Quantification in Food
- Genetic Mapping and Diversity in Plants and Animals
- Fish Ecology and Management Studies
- Animal Genetics and Reproduction
- Invertebrate Immune Response Mechanisms
- Physiological and biochemical adaptations
- MicroRNA in disease regulation
- Cancer-related molecular mechanisms research
- Fish Biology and Ecology Studies
- Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
- CRISPR and Genetic Engineering
- interferon and immune responses
- Oceanographic and Atmospheric Processes
- RNA and protein synthesis mechanisms
- Catalytic Processes in Materials Science
- RNA modifications and cancer
- Adipose Tissue and Metabolism
- Wound Healing and Treatments
- Immune Response and Inflammation
Xiamen University
2016-2025
Shanghai Ocean University
2015-2025
Shanghai Ninth People's Hospital
2022-2025
University of Macau
2019-2025
Shanghai Jiao Tong University
2011-2025
Second Affiliated Hospital of Guangzhou Medical University
2024
Guangzhou Medical University
2024
Bryan College
2024
Texas A&M University
2013-2024
Chinese Academy of Sciences
2012-2024
Xiaowen Sun and colleagues report the whole-genome sequencing of common carp, Cyprinus carpio. They also resequenced 33 representative accessions from a worldwide collection provide insights into population structure evolution. The carpio, is one most important cyprinid species globally accounts for 10% freshwater aquaculture production. Here we present draft genome domesticated C. carpio (strain Songpu), whose current assembly contains 52,610 protein-coding genes approximately 92.3%...
Crustacea, the subphylum of Arthropoda which dominates aquatic environment, is major importance in ecology and fisheries. Here we report genome sequence Pacific white shrimp Litopenaeus vannamei, covering ~1.66 Gb (scaffold N50 605.56 Kb) with 25,596 protein-coding genes a high proportion simple repeats (>23.93%). The expansion related to vision locomotion probably central its benthic adaptation. Frequent molting may be explained by an intensified ecdysone signal pathway through gene...
Abstract We report an Ag 1 single‐atom catalyst (Ag /MnO 2 ), which was synthesized from thermal transformation of nanoparticles (NPs) and surface reconstruction MnO . The evolution process NPs to single atoms is firstly revealed by various techniques, including in situ ETEM, XRD DFT calculations. temperature‐induced the (211) (310) lattice plane critical firmly confine existing atoms; that is, treatment driving force for formation atoms. as‐obtained achieved 95.7 % Faradic efficiency at...
Abstract Catfish represent 12% of teleost or 6.3% all vertebrate species, and are enormous economic value. Here we report a high-quality reference genome sequence channel catfish ( Ictalurus punctatus ), the major aquaculture species in US. The was validated by genetic mapping 54,000 SNPs, annotated with 26,661 predicted protein-coding genes. Through comparative analysis genomes transcriptomes scaled scaleless fish scale regeneration experiments, address genomic basis for most striking...
Apart from sharing common ancestry with chordates, sea cucumbers exhibit a unique morphology and exceptional regenerative capacity. Here we present the complete genome sequence of an economically important cucumber, A. japonicus, generated using Illumina PacBio platforms, to achieve assembly approximately 805 Mb (contig N50 190 Kb scaffold 486 Kb), 30,350 protein-coding genes high continuity. We used this resource explore key genetic mechanisms behind biological characters cucumbers....
Abstract Common carp ( Cyprinus carpio ) is an allotetraploid species derived from recent whole genome duplication and provides a model to study polyploid evolution in vertebrates. Here, we generate three chromosome-level reference genomes of C. compare related diploid Cyprinid genomes. We identify Barbinae lineage as potential progenitor then divide the into two subgenomes marked by distinct similarity progenitor. estimate that progenitors diverged around 23 Mya merged 12.4 based on...
Previous estimates of tropical forest carbon loss in the twenty-first century using satellite data typically focus on its magnitude, whereas regional trajectories and associated drivers are rarely reported. Here we used different high-resolution datasets to show a doubling gross worldwide from 0.97 ± 0.16 PgC yr−1 2001–2005 1.99 0.13 2015–2019. This increase conversion is higher than bookkeeping models forced by land-use statistical data, which no trend or slight decline emissions early...
The defects and phase segregation in perovskite will significantly reduce the performance stability of solar cells (PSCs). In this work, a deformable coumarin is employed as multifunctional additive for formamidinium-cesium (FA-Cs) perovskite. During annealing process perovskite, partial decomposition passivates Pb2+ , iodine, organic cation defects. Additionally, can affect colloidal size distributions, resulting relatively large grain good crystallinity target film. Hence, carrier...
This study took Xiangshan Bay as an example to illustrate the variation characteristics of physicochemical environments (temperature, salinity, light, nutrients, and currents) during one kelp cultivation cycle. The was conducted from November 2020 May 2021 through tracking down observations. Furthermore, environmental factors were evaluated using suitability functions growth, aiming provide references for promoting in South China. We discussed self-limiting effect nutrients culture zone....
Background Common carp (Cyprinus carpio) is one of the most important aquaculture species Cyprinidae with an annual global production 3.4 million tons, accounting for nearly 14% freshwater in world. Due to economical and ecological importance common carp, genomic data are eagerly needed genetic improvement purpose. However, there still no sufficient transcriptome available. The objective project sequence deeply provide well-assembled sequences research community. Result Transcriptome...
Interleukin-6 (IL-6) is a pleiotropic cytokine that plays central role in host defense. IL-6 expression can be regulated at both transcriptional and post-transcriptional level. We used combination of bioinformatics experimental techniques to demonstrate the miR-365 direct negative regulator IL-6. Overexpression mimics decreased activity luciferase reporter containing 3′-UTR led repression protein. In contrast, ectopic inhibitor elevated expression. The regulation was strictly dependent on...
High density genetic linkage maps are essential for QTL fine mapping, comparative genomics and high quality genome sequence assembly. In this study, we constructed a high-density high-resolution map with 28,194 SNP markers on 14,146 distinct loci common carp based high-throughput genotyping the 250 K single nucleotide polymorphism (SNP) array in mapping family. The length of consensus was 10,595.94 cM an average locus interval 0.75 marker 0.38 cM. Comparative genomic analysis revealed level...
A large number of single nucleotide polymorphisms (SNPs) have been identified in common carp (Cyprinus carpio) but, as yet, no high-throughput genotyping platform is available for this species. C. carpio an important aquaculture species that accounts nearly 14% freshwater production worldwide. We developed array with 250,000 SNPs and evaluated its performance using samples from various strains carpio. The used on the were selected two resources: transcribed sequences RNA-seq data four...
Background The common carp is an important aquaculture species that widely distributed across the world. During long history of domestication, numerous strains with diverse skin colors have been established. Skin color used as a visual criterion to determine market value carp. However, genetic basis has not extensively studied. Methodology/Principal Findings In this study, we performed Illumina sequencing on two strains: reddish Xingguo red and brownish-black Yellow River A total 435,348,868...
The crucian carp is an important aquaculture species and a potential model to study genome evolution physiological adaptation. However, so far the genomics transcriptomics data available for this are still scarce. We performed de novo transcriptome sequencing of four cDNA libraries representing brain, muscle, liver kidney tissues respectively, each with six specimens. removal low quality reads resulted in 2.62 million raw reads, which were assembled as 127,711 unigenes, including 84,867...
Fast-spiking (FS) interneurons in the brain are self-innervated by powerful inhibitory GABAergic autaptic connections. By computational modelling, we investigate how inhibition regulates firing response of such interneurons. Our results indicate that both boosts current threshold for action potential generation and modulates input-output gain FS The transmission delay is identified as a key parameter controls patterns determines multistability regions Furthermore, observe neuronal noise...
A persistent enigma is the rarity of polyploidy in animals, compared to its prevalence plants. Although animal polyploids are thought experience deleterious genomic chaos during initial polyploidization and subsequent rediploidization processes, this hypothesis has not been tested. We provide an improved reference-quality de novo genome for allotetraploid goldfish whose origin dates ~15 million years ago. Comprehensive analyses identify changes subgenomic evolution from asymmetrical...