Jan Baumann

ORCID: 0000-0002-4439-7498
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About
Contact & Profiles
Research Areas
  • Respiratory viral infections research
  • Influenza Virus Research Studies
  • Viral Infections and Outbreaks Research
  • Cancer, Lipids, and Metabolism
  • Cancer, Hypoxia, and Metabolism
  • Animal Disease Management and Epidemiology
  • Viral Infections and Vectors
  • SARS-CoV-2 and COVID-19 Research
  • Digital Humanities and Scholarship
  • Endoplasmic Reticulum Stress and Disease
  • COVID-19 epidemiological studies
  • Cellular transport and secretion
  • Lipid metabolism and biosynthesis
  • Disaster Response and Management
  • Cancer Diagnosis and Treatment
  • Libraries and Information Services
  • Mosquito-borne diseases and control
  • Attachment and Relationship Dynamics
  • Ubiquitin and proteasome pathways
  • Monoclonal and Polyclonal Antibodies Research
  • Transgenic Plants and Applications
  • Metabolomics and Mass Spectrometry Studies
  • RNA modifications and cancer
  • Education Methods and Technologies
  • Bacillus and Francisella bacterial research

World Health Organization Regional Office for Europe
2022-2024

Philipps University of Marburg
2014-2021

Roche (United States)
2021

Robert Koch Institute
2020-2021

Institute of Virology of the Slovak Academy of Sciences
2021

Saarland University
2019

Universität der Bundeswehr München
2019

Institut für Mikrobiologie der Bundeswehr
2019

Mali-Folkecenter
2019

University at Albany, State University of New York
2011-2018

Miles W. Carroll David A. Matthews Julian A. Hiscox Michael J. Elmore Georgios Pollakis and 95 more Andrew Rambaut Roger Hewson Isabel García-Dorival Joseph Akoi Boré Raymond Koundouno Saïd Abdellati Babak Afrough John Aiyepada Patience Akhilomen Danny Asogun Barry Atkinson Marlis Badusche Amadou Bah Simon Bate Jan Baumann Dirk Becker Beate Becker‐Ziaja Anne Bocquin Benny Borremans Andrew Bosworth Jan Peter Boettcher Angela Cannas Fabrizio Carletti Concetta Castilletti Simon Clark Francesca Colavita Sandra Diederich Adomeh Donatus Sophie Duraffour Deborah U. Ehichioya Heinz Ellerbrok María Dolores Fernández-García Alexandra Fizet Erna Fleischmann Sophie Gryseels Antje Hermelink Julia Hinzmann Ute Hopf-Guevara Yemisi Ighodalo Lisa Jameson Anne Kelterbaum Zoltán Kis Stefan Kloth Claudia Kohl Miša Korva Annette Kraus Eeva Kuisma Andreas Kurth Britta Liedigk Christopher H. Logue Anja Lüdtke Piet Maes James W. I. McCowen Stéphane Mély Marc Mertens Silvia Meschi Benjamin Meyer Janine Michel Peter Molkenthin César Muñoz‐Fontela Doreen Muth Edmund Newman Didier Ngabo Lisa Oestereich Jennifer Okosun Thomas Olokor Racheal Omiunu Emmanuel Omomoh Elisa Pallasch Bernadett Pályi Jasmine Portmann Thomas Pottage Catherine Pratt Simone Priesnitz Serena Quartu Julie C. F. Rappe Johanna Repits Martin Richter Martin Rudolf Andreas Sachse Kristina M. Schmidt Gordian Schudt Thomas Strecker Ruth Thom Stephen R. Thomas Ekaete Tobin H. Dennis Tolley Jochen Trautner Tine Vermoesen Inês Vitoriano Matthias Wagner Svenja Wolff Constanze Yue Maria Rosaria Capobianchi Birte Kretschmer

Analysis of 179 new Ebola virus sequences from patient samples collected in Guinea between March 2014 and January 2015 shows how different lineages evolved spread West Africa. Miles Carroll colleagues report describe the genetic evolution circulating Africa, based on 2015. Their analysis Africa Sierra Leone, Liberia. is currently witnessing most extensive (EBOV) outbreak so far recorded1,2,3. Until now, there have been 27,013 reported cases 11,134 deaths. The origin thought to a zoonotic...

10.1038/nature14594 article EN cc-by-nc-sa Nature 2015-06-17

To end the largest known outbreak of Ebola virus disease (EVD) in West Africa and to prevent new transmissions, rapid epidemiological tracing cases contacts was required. The ability quickly identify unknown sources chains transmission is key ending EVD epidemic even greater importance context recent reports (EBOV) persistence survivors. Phylogenetic analysis complete EBOV genomes can provide important information on source any infection. A local deep sequencing facility established at...

10.1093/ve/vew016 article EN cc-by-nc Virus Evolution 2016-01-01

Tether complexes play important roles in endocytic and exocytic trafficking of lipids proteins. In yeast, the multisubunit transport protein particle (TRAPP) tether regulates endoplasmic reticulum (ER)-to-Golgi intra-Golgi is also implicated autophagy. addition, TRAPP complex acts as a guanine nucleotide exchange factor (GEF) for Ypt1, which homologous to human Rab1a Rab1b. Here, we show that TRAPPC13 other subunits are critically involved survival response several Golgi-disrupting agents....

10.1242/jcs.199521 article EN Journal of Cell Science 2017-05-24

HER2/neu-positive breast cancer cells have recently been shown to use a unique Warburg-like metabolism for survival and aggressive behavior. These exhibit increased fatty acid synthesis storage compared normal or other tumor cells. Disruption of this synthetic process results in apoptosis. Since the addition physiological doses exogenous palmitate induces cell death cells, pathway is likely operating at its limits these We studied response concentrations identify lipotoxicity-associated...

10.1186/s12885-016-2611-8 article EN cc-by BMC Cancer 2016-07-27

The secretory pathway is a major determinant of cellular homoeostasis. While research into stress signaling has so far mostly focused on the endoplasmic reticulum (ER), emerging data suggest that Golgi itself serves as an important hub capable initiating responses. To systematically identify novel mediators, we performed transcriptomic analysis cells exposed to three different pharmacological compounds known elicit fragmentation: brefeldin A, golgicide and monensin. Subsequent gene-set...

10.1091/mbc.e17-06-0418 article EN cc-by-nc-sa Molecular Biology of the Cell 2017-11-08

The H1N1 Eurasian avian-like swine (EAsw) influenza viruses originated from an avian virus. To characterize potential changes in the membrane fusion activity of hemagglutinin (HA) during avian-to-swine adaptation virus, we studied EAsw isolated first years their circulation pigs and closely related contemporary wild aquatic birds. Compared to viruses, were less sensitive neutralization by lysosomotropic agent NH4Cl MDCK cells, had a higher pH optimum hemolytic activity, stable at acidic pH....

10.1128/jvi.02332-15 article EN Journal of Virology 2015-11-26

Abstract Background The Crabtree-negative yeast species Kluyveromyces lactis has been established as an attractive microbial expression system for recombinant proteins at industrial scale. Its LAC genes allow utilization of the inexpensive sugar lactose a sole source carbon and energy. Lactose efficiently induces LAC4 promoter, which can be used to drive regulated heterologous genes. So far, strain manipulation K. by homologous recombination was hampered high rate non-homologous end-joining....

10.1186/1475-2859-11-112 article EN cc-by Microbial Cell Factories 2012-08-20

ABSTRACT Hemagglutinin (HA) of H3N2/1968 pandemic influenza viruses differs from the putative avian precursor by seven amino acid substitutions. Substitutions Q226L and G228S are known to be essential for adaptation HA mammals. We found that introduction avian-virus-like acids at five other positions (positions 62, 81, 92, 144, 193) A/Hong Kong/1/1968 virus decreased viral replication in human cells transmission pigs. Thus, substitutions some these facilitated emergence virus.

10.1128/jvi.01292-15 article EN Journal of Virology 2015-09-17

COVID-19 transmission and disease dynamics in sub-Saharan Africa are not well understood. Our study aims to provide insight into epidemiology Malawi by estimating SARS-CoV-2 prevalence immunity after infection a hospital-based setting.We conducted hospital-based, convenience sampling, cross-sectional survey for Lilongwe, Malawi. Participants answered questionnaire were tested enzyme-linked immunosorbent assay real-time reverse-transcription polymerase chain reaction (RT-PCR). A surrogate...

10.1016/j.ijid.2021.12.336 article EN cc-by-nc-nd International Journal of Infectious Diseases 2021-12-17

The Golgi apparatus is increasingly recognized as a major hub for cellular signaling and involved in numerous pathologies, including neurodegenerative diseases cancer. study of stress-induced pathways relies on the selectivity available tool compounds which currently only few are known. To discover novel Golgi-fragmenting agents, transcriptomic profiles cells treated with brefeldin A, golgicide or monensin were generated compared database gene expression from other bioactive small molecules....

10.1091/mbc.e17-03-0176 article EN cc-by-nc-sa Molecular Biology of the Cell 2017-10-26

We report detection of Lassa virus and Crimean-Congo hemorrhagic fever infections in the area Bamako, capital Mali. Our investigation found 2 cases infection with each these viruses. These results show potential for both viruses to be endemic

10.3201/eid2505.181047 article EN cc-by Emerging infectious diseases 2019-03-11

Since the beginning of year 2020, SARS-CoV-2 coronavirus has spread globally at a tremendous pace. Studies on prevalence antibodies in population help estimate number people that have already been infected. They also allow an undetected infections i.e. do not appear data officially reported cases. The interpretation study results needs to consider bias from selective sampling and diagnostic test properties. To promote networking co-operation between scientists, Robert Koch Institute compiled...

10.25646/7024 article EN PubMed 2020-11-01

Recent work has shown that HER2/neu-positive breast cancer cells rely on a unique Warburg-like metabolism for survival and aggressive behavior. These are dependent fatty acid (FA) synthesis, show markedly increased levels of stored fats disruption the synthetic process results in apoptosis. In this study, we used global metabolite profiling multi-omics network analysis approach to model metabolic changes physiology under palmitate-supplemented growth conditions gain insights into molecular...

10.18632/oncotarget.25500 article EN Oncotarget 2018-06-04

The hemagglutinin (HA) of A/H3N2 pandemic influenza viruses (IAVs) 1968 differed from its inferred avian precursor by eight amino acid substitutions. To determine their phenotypic effects, we studied recombinant variants A/Hong Kong/1/1968 virus containing either human-type or avian-type acids in the corresponding positions HA. HA displayed receptor binding profile and high conformational stability typical for duck IAVs. Substitutions Q226L G228S, addition to known effects on specificity...

10.1371/journal.ppat.1009566 article EN cc-by PLoS Pathogens 2021-09-23

Adjustment disorder (AD) is one of the most frequent mental health conditions after stressful life experiences in medical setting. The diagnosis has been conceptually redefined International Classification Diseases (ICD-11) and now includes specific symptoms preoccupations failure to adapt. current study assesses prevalence self-reported ICD-11 AD among organ transplantation patients their relatives, explores association patients’ demographic-, transplant-, health-related characteristics...

10.3390/ijerph16173030 article EN International Journal of Environmental Research and Public Health 2019-08-21

Lipid droplets (LDs) are ubiquitous intracellular structures whose formation, growth, and maintenance highly regulated (Wang et al., 2013; Ranall 2011; Goodman, 2009). metabolism droplet dynamics of considerable interest to agriculture, biofuel production, viral pathology, nutrition, cancer biology (Walther Farese, 2009; Liu 2010). Accumulation fatty acids neutral lipids in nonadipose tissues is cytotoxic (Kourtidis BODIPY 493/503...

10.21769/bioprotoc.1511 article EN BIO-PROTOCOL 2015-01-01

Background/Introduction: Rapid Response Mobile Laboratories (RRML) are a crucial component of preparedness and response to health emergencies, both as stand-alone asset in conjunction with other rapid capacities. The development an RRML classification system 2019 1 defines laboratory structure provides foundation for the minimum standards under umbrella WHO Global Outbreak Alert Network (GOARN). Objectives: These define requirements RRMLs/GOARN field facilitate their interoperability...

10.1017/s1049023x22001674 article EN Prehospital and Disaster Medicine 2022-11-01
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