Dongyuan Liu

ORCID: 0000-0002-9128-5747
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About
Contact & Profiles
Research Areas
  • Optical Imaging and Spectroscopy Techniques
  • Photoacoustic and Ultrasonic Imaging
  • Catalytic Processes in Materials Science
  • Non-Invasive Vital Sign Monitoring
  • Electrocatalysts for Energy Conversion
  • Cancer-related molecular mechanisms research
  • Genomics and Phylogenetic Studies
  • Soybean genetics and cultivation
  • Chromosomal and Genetic Variations
  • Catalysis and Hydrodesulfurization Studies
  • Nematode management and characterization studies
  • Infrared Thermography in Medicine
  • Endometriosis Research and Treatment
  • Nonlinear Differential Equations Analysis
  • Nanomaterials for catalytic reactions
  • Glutathione Transferases and Polymorphisms
  • Genetic Mapping and Diversity in Plants and Animals
  • Advanced biosensing and bioanalysis techniques
  • Differential Equations and Numerical Methods
  • Mobile Ad Hoc Networks
  • Integrated Energy Systems Optimization
  • Hemodynamic Monitoring and Therapy
  • Spectroscopy Techniques in Biomedical and Chemical Research
  • Advanced MRI Techniques and Applications
  • Technology and Security Systems

Tianjin University
2018-2025

Beijing Luhe Hospital Affiliated to Capital Medical University
2018-2025

Qingdao University of Technology
2023-2025

China University of Petroleum, East China
2019-2025

Harbin Institute of Technology
2020-2025

State Key Laboratory of Gas Disaster Detecting, Preventing and Emergency Controlling
2022-2024

Northeast Electric Power University
2018-2024

Chinese People's Liberation Army
2024

University of Kassel
2023-2024

People's Liberation Army 401 Hospital
2024

We report a draft sequence for the genome of domesticated silkworm (Bombyx mori), covering 90.9% all known genes. Our estimated gene count is 18,510, which exceeds 13,379 genes reported Drosophila melanogaster. Comparative analyses to fruitfly, mosquito, spider, and butterfly reveal both similarities differences in content.

10.1126/science.1102210 article EN Science 2004-12-10

We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over drafts 2002. Tested against a nonredundant collection 19,079 full-length cDNAs, 97.7% genes are aligned, without fragmentation, to mapped super-scaffolds one other genome. introduce gene identification procedure plants that does not rely on similarity known remove erroneous predictions resulting from transposable elements....

10.1371/journal.pbio.0030038 article EN cc-by PLoS Biology 2005-01-21

Here we present the first diploid genome sequence of an Asian individual. The was sequenced to 36-fold average coverage using massively parallel sequencing technology. We aligned short reads onto NCBI human reference 99.97% coverage, and guided by genome, used uniquely mapped assemble a high-quality consensus for 92% individual’s genome. identified approximately 3 million single-nucleotide polymorphisms (SNPs) inside this region, which 13.6% were not in dbSNP database. Genotyping analysis...

10.1038/nature07484 article EN cc-by-nc-sa Nature 2008-11-01

Large-scale genotyping plays an important role in genetic association studies. It has provided new opportunities for gene discovery, especially when combined with high-throughput sequencing technologies. Here, we report efficient solution large-scale genotyping. We call it specific-locus amplified fragment (SLAF-seq). SLAF-seq technology several distinguishing characteristics: i) deep to ensure accuracy; ii) reduced representation strategy reduce costs; iii) pre-designed scheme optimize...

10.1371/journal.pone.0058700 article EN cc-by PLoS ONE 2013-03-19

Abstract The Brassica genus encompasses three diploid and allopolyploid genomes, but a clear understanding of the evolution agriculturally important traits via polyploidy is lacking. We assembled an juncea genome by shotgun single-molecule reads integrated to genomic genetic maps. discovered that A subgenomes B. napus each had independent origins. Results suggested were monophyletic origin evolved into vegetable-use oil-use subvarieties. Homoeolog expression dominance occurs between B . , in...

10.1038/ng.3657 article EN cc-by Nature Genetics 2016-09-05

The kiwifruit (Actinidia chinensis) is an economically and nutritionally important fruit crop with remarkably high vitamin C content. Here we report the draft genome sequence of a heterozygous kiwifruit, assembled from ~140-fold next-generation sequencing data. has total length 616.1 Mb contains 39,040 genes. Comparative genomic analysis reveals that undergone ancient hexaploidization event (γ) shared by core eudicots two more recent whole-genome duplication events. Both events occurred...

10.1038/ncomms3640 article EN cc-by-nc-sa Nature Communications 2013-10-18

Linkage maps enable the study of important biological questions. The construction high-density linkage appears more feasible since advent next-generation sequencing (NGS), which eases SNP discovery and high-throughput genotyping large population. However, marker number explosion errors from NGS data challenge computational efficiency map quality methods. Here we report HighMap method for constructing data. employs an iterative ordering error correction strategy based on a k-nearest neighbor...

10.1371/journal.pone.0098855 article EN cc-by PLoS ONE 2014-06-06

The design and construction of highly efficient catalytic active sites for promoting hydrogen spillover are great significance improving hydrocracking (HCK) hydrodesulfurization (HDS) performance in slurry-phase hydrogenation vacuum residue (VR) but still challenging. Herein, we report a carbon-supported MoCo dual-atomic site catalyst (MoCo DAC/C) propose an oxygen-vacancy-induced built-in electric field (BIEF) regulation mechanism HCK HDS. It was found that the coordination structure...

10.1021/acscatal.3c05911 article EN ACS Catalysis 2024-02-15

Abstract Retroposition is widely found to play essential roles in origination of new mammalian and other animal genes. However, the scarcity retrogenes plants has led assumption that plant genomes rarely evolve gene duplicates by retroposition, despite abundant retrotransposons a reported long terminal repeat (LTR) retrotransposon-mediated mechanism retroposing cellular genes maize (Zea mays). We show extensive retropositions rice (Oryza sativa) genome, with 1235 identified primary...

10.1105/tpc.106.041905 article EN The Plant Cell 2006-07-07

Present-day soybeans consist of elite cultivars and landraces (Glycine max, fully domesticated (FD)), annual wild type soja, nondomesticated (ND)), semi-wild (semi-domesticated (SD)). FD soybean originated in China, although the details its domestication history remain obscure. More than 500 diverse accessions were sequenced using specific-locus amplified fragment sequencing (SLAF-seq) to address fundamental questions regarding domestication. In total, 64,141 single nucleotide polymorphisms...

10.1111/nph.13626 article EN New Phytologist 2015-10-19

Pomegranate (Punica granatum L.) has an ancient cultivation history and become emerging profitable fruit crop due to its attractive features such as the bright red appearance high abundance of medicinally valuable ellagitannin-based compounds in peel aril. However, limited genomic resources have restricted further elucidation genetics evolution these interesting traits. Here, we report a 274-Mb high-quality draft pomegranate genome sequence, which covers approximately 81.5% estimated 336-Mb...

10.1111/pbi.12875 article EN cc-by Plant Biotechnology Journal 2017-12-24

Soybean white mold (SWM), caused by Sclerotinia sclerotiorum ((Lib.) W. Phillips), is currently considered to be the second most important cause of soybean yield loss due disease. Research needed identify SWM-resistant germplasm and gain a better understanding genetic molecular basis SWM resistance in soybean. Stem pigmentation after treatment with oxaloacetic acid an effective indicator SWM. A total 128 recombinant inbred lines (RILs) derived from cross 'Maple Arrow' (partial resistant SWM)...

10.1111/tpj.12810 article EN The Plant Journal 2015-03-03

The cost of Energy Storage System (ESS) for frequency regulation is difficult to calculate due battery's degradation when an ESS in grid-connected operation. To solve this problem, the influence mechanism actual operating conditions on life Li-ion battery energy storage analyzed. A control strategy participating grid constructed and a accounting model considering effect established. estimated annual average under different dead bands SOC set-points are calculated. case studies show that...

10.1186/s41601-018-0076-2 article EN cc-by Protection and Control of Modern Power Systems 2018-02-05

Soybean cyst nematode (SCN, Heterodera glycines Ichinohe) is one of the most fatal pests soybean (Glycine max (L.) Merr.) worldwide and causes huge loss yield each year. Multiple sources resistance are urgently needed for effective management SCN via development resistant cultivars. The aim present study was to investigate genetic architecture HG Type 0 (race 3) 1.2.3.5.7 4) in landraces released elite cultivars mostly from China. A total 440 diverse were screened 1.2.3.5.7. Exactly 131 new...

10.1186/s12864-015-1800-1 article EN cc-by BMC Genomics 2015-08-12

The NiN 4 –Cl SAs/N–C electrocatalyst consisting of active sites with axial Ni–Cl coordination was synthesized. Cl-coordination modulates the electronic configuration Ni–N and enhances interaction Ni–H efficiently.

10.1039/d1ta08287f article EN Journal of Materials Chemistry A 2021-12-08

We present a wide-field illumination time-domain (TD) diffusion optical tomography (DOT) for three-dimensional (3-D) reconstruction within shallow region under the illuminated surface of turbid medium. The methodological foundation is laid on single-pixel spatial frequency domain (SFD) imaging that facilitates adoption well-established time-correlated single-photon counting (TCSPC)-based TD detection and generalized pulse spectrum techniques (GPST)-based reconstruction. To ameliorate defects...

10.1364/oe.513909 article EN cc-by Optics Express 2024-01-25

The Himalayan marmot (Marmota himalayana) is a hibernating mammal that inhabits the high-elevation regions of mountains. Here we present draft genome marmot, with total assembly length 2.47 Gb. Phylogenetic analyses showed diverged from Mongolian approximately 1.98 million years ago. Transcriptional changes during hibernation included genes responsible for fatty acid metabolism in liver and involved complement coagulation cascades stem cell pluripotency pathways brain. Two selective sweep...

10.1016/j.isci.2018.11.034 article EN cc-by-nc-nd iScience 2018-12-20
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