Avram J. Holmes

ORCID: 0000-0001-6583-803X
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About
Contact & Profiles
Research Areas
  • Functional Brain Connectivity Studies
  • Mental Health Research Topics
  • Advanced Neuroimaging Techniques and Applications
  • Neural dynamics and brain function
  • Advanced MRI Techniques and Applications
  • Genetic Associations and Epidemiology
  • Health, Environment, Cognitive Aging
  • Neural and Behavioral Psychology Studies
  • Anxiety, Depression, Psychometrics, Treatment, Cognitive Processes
  • Schizophrenia research and treatment
  • Stress Responses and Cortisol
  • Genomic variations and chromosomal abnormalities
  • Birth, Development, and Health
  • Tryptophan and brain disorders
  • Genetics and Neurodevelopmental Disorders
  • Epigenetics and DNA Methylation
  • Congenital heart defects research
  • Neurotransmitter Receptor Influence on Behavior
  • Cognitive Abilities and Testing
  • Bioinformatics and Genomic Networks
  • Child and Adolescent Psychosocial and Emotional Development
  • EEG and Brain-Computer Interfaces
  • Treatment of Major Depression
  • Memory and Neural Mechanisms
  • Attention Deficit Hyperactivity Disorder

Rutgers, The State University of New Jersey
2023-2025

Rutgers Sexual and Reproductive Health and Rights
2023-2025

Allen Institute for Brain Science
2024-2025

Yale University
2015-2024

Kennesaw State University
2023

Harvard University
2012-2022

Massachusetts General Hospital
2013-2022

Brigham and Women's Hospital
2016-2022

Diakonhjemmet Hospital
2021

Athinoula A. Martinos Center for Biomedical Imaging
2012-2019

A central goal in systems neuroscience is the parcellation of cerebral cortex into discrete neurobiological "atoms". Resting-state functional magnetic resonance imaging (rs-fMRI) offers possibility vivo human cortical parcellation. Almost all previous parcellations relied on 1 2 approaches. The local gradient approach detects abrupt transitions connectivity patterns. These potentially reflect areal boundaries defined by histology or visuotopic fMRI. By contrast, global similarity clusters...

10.1093/cercor/bhx179 article EN Cerebral Cortex 2017-06-23

Objective: Major depressive disorder is characterized by impaired reward processing, possibly due to dysfunction in the basal ganglia. However, few neuroimaging studies of depression have distinguished between anticipatory and consummatory phases processing. Using functional MRI (fMRI) a task that dissociates authors tested hypothesis individuals with major would show reduced reward-related responses ganglia structures. Method: A monetary incentive delay was presented 30 unmedicated 31...

10.1176/appi.ajp.2008.08081201 article EN American Journal of Psychiatry 2009-05-02
Richard A. I. Bethlehem Jakob Seidlitz Simon R. White Jacob W. Vogel Karen Anderson and 95 more Chris Adamson Sophie Adler George S. Alexopoulos Evdokia Anagnostou Ariosky Areces-González Duncan E. Astle Bonnie Auyeung Muhammad Ayub Ji Hyun Bae Gareth Ball Simon Baron‐Cohen Richard Beare Saashi A. Bedford Vivek Benegal Frauke Beyer John Blangero Manuel Blesa James P. Boardman Matthew Borzage Jorge Bosch‐Bayard Niall Bourke Vince D. Calhoun M. Mallar Chakravarty C. Chen Casey Chertavian Gaël Chételat Yap Seng Chong James H. Cole Aiden Corvin Manuela Costantino Eric Courchesne Fabrice Crivello Vanessa Cropley Jennifer Crosbie Nicolás Crossley Marion Delarue Richard Delorme Sylvane Desrivières Gabriel A. Devenyi Maria A. Di Biase Raymond J. Dolan Kirsten A. Donald Gary Donohoe Katharine Dunlop A. David Edwards Jed T. Elison Cameron T. Ellis Jeremy A. Elman Lisa T. Eyler Damien A. Fair Eric Feczko Paul C. Fletcher Peter Fonagy Carol E. Franz Lídice Galán‐García Ali Gholipour Jay N. Giedd John H. Gilmore David C. Glahn Ian Goodyer P. Ellen Grant Nynke A. Groenewold Faith M. Gunning Ruben C. Gur R. C. Gur Christopher Hammill Oskar Hansson Trey Hedden Andreas Heinz R. N. Henson Katja Heuer Jacqueline Hoare Bharath Holla Avram J. Holmes Rosemary Holt Hao Huang K. Im Jonathan Ipser C. R. Jack Andrea Parolin Jackowski Tianye Jia K. A. Johnson Peter B. Jones D. T. Jones R. S. Kahn Hasse Karlsson Linnéa Karlsson Ryuta Kawashima Elizabeth W. Kelley S.J. Kern Ki Woong Kim Manfred G. Kitzbichler William S. Kremen François Lalonde Brigitte Landeau

Over the past few decades, neuroimaging has become a ubiquitous tool in basic research and clinical studies of human brain. However, no reference standards currently exist to quantify individual differences metrics over time, contrast growth charts for anthropometric traits such as height weight

10.1038/s41586-022-04554-y article EN cc-by Nature 2022-04-06
Derrek P. Hibar Jason L. Stein Miguel E. Rentería Alejandro Arias Väsquez Sylvane Desrivières and 95 more Neda Jahanshad Roberto Toro Katharina Wittfeld Lucija Abramovic Micael Andersson Benjamin S. Aribisala Nicola J. Armstrong Manon Bernard Marc M. Bohlken Marco P. Boks Janita Bralten Andrew Brown M. Mallar Chakravarty Qiang Chen Christopher R. K. Ching Gabriel Cuéllar-Partida Anouk den Braber Sudheer Giddaluru Aaron L. Goldman O. Grimm Tulio Guadalupe Johanna Haß Girma Woldehawariat Avram J. Holmes Martine Hoogman Deborah Janowitz Tianye Jia Sungeun Kim Marieke Klein Bernd Kraemer Phil H. Lee Loes M. Olde Loohuis Michelle Luciano Christine Macare Karen A. Mather Manuel Mattheisen Yuri Milaneschi Kwangsik Nho Martina Papmeyer Adaikalavan Ramasamy Shannon L. Risacher Roberto Roiz‐Santiáñez Emma J. Rose Alireza Salami Philipp G. Sämann Lianne Schmaal Andrew J. Schork Jean Shin Lachlan T. Strike Alexander Teumer Marjolein M. J. van Donkelaar Kristel R. van Eijk James Walters Lars T. Westlye Christopher D. Whelan Anderson M. Winkler Marcel P. Zwiers Saud Alhusaini Lavinia Athanasiu Stefan Ehrlich Marina Hakobjan Cecilie B. Hartberg Unn K. Haukvik Angelien J.G.A.M. Heister David Hoehn Dalia Kasperavičiūtė David C. Liewald Lorna M. Lopez Remco R. Makkinje Mar Matarín Marlies Naber Dean McKay Margaret Needham Allison C. Nugent Benno Pütz Natalie A. Royle Li Shen Emma Sprooten Daniah Trabzuni Saskia S. L. van der Marel K.J.E. van Hulzen Esther Walton Christiane Wolf Laura Almasy David Ames Sampath Arepalli Amelia A. Assareh Mark E. Bastin Henry Brodaty Kazima Bulayeva Melanie A. Carless Sven Cichon Aiden Corvin Joanne E. Curran Michael Czisch

10.1038/nature14101 article EN Nature 2015-01-20
Jason L. Stein Sarah E. Medland Alejandro Arias Väsquez Derrek P. Hibar Rudy E Senstad and 95 more Anderson M. Winkler Roberto Toro Katja Appel Richard Barteček Ørjan Bergmann Manon Bernard Andrew Brown Dara M. Cannon M. Mallar Chakravarty Andrea Christoforou Martin Domín O. Grimm Marisa O. Hollinshead Avram J. Holmes Georg Homuth Jouke‐Jan Hottenga Camilla Langan Lorna M. Lopez Narelle K. Hansell Kristy Hwang Sungeun Kim Gonzalo Laje Phil H. Lee Xinmin Liu Eva Loth Anbarasu Lourdusamy Morten Mattingsdal Sebastian Mohnke Susana Muñoz Maniega Kwangsik Nho Allison C. Nugent Carol O’Brien Martina Papmeyer Benno Pütz Adaikalavan Ramasamy Jerod M. Rasmussen Mark Rijpkema Shannon L. Risacher J. Cooper Roddey Emma J. Rose Mina Ryten Li Shen Emma Sprooten Eric Strengman Alexander Teumer Daniah Trabzuni Jessica A. Turner Kristel van Eijk Theo G.M. van Erp Marie‐José van Tol Katharina Wittfeld Christiane Wolf Saskia Woudstra André Alemán Saud Alhusaini Laura Almasy Elisabeth B. Binder David G. Brohawn Rita M. Cantor Melanie A. Carless Aiden Corvin Michael Czisch Joanne E. Curran Gail Davies Marcio Almeida Norman Delanty Chantal Depondt Ravi Duggirala Thomas D. Dyer Susanne Erk Jesen Fagerness Peter T. Fox Nelson B. Freimer Michael Gill Harald H.H. Göring Donald J. Hagler David Hoehn Herta Flor Martine Hoogman Norbert Hosten Neda Jahanshad Matthew P. Johnson Dalia Kasperavičiūtė Jack W. Kent Peter Kochunov Jack L. Lancaster Stephen M. Lawrie David C. Liewald René C.W. Mandl Mar Matarín Manuel Mattheisen Eva Meisenzahl Ingrid Melle Eric K. Moses Thomas W. Mühleisen

10.1038/ng.2250 article EN Nature Genetics 2012-04-15

Resting-state functional magnetic resonance imaging (rs-fMRI) offers the opportunity to delineate individual-specific brain networks. A major question is whether network topography (i.e., location and spatial arrangement) behaviorally relevant. Here, we propose a multi-session hierarchical Bayesian model (MS-HBM) for estimating cortical networks investigate can predict human behavior. The multiple layers of MS-HBM explicitly differentiate intra-subject (within-subject) from inter-subject...

10.1093/cercor/bhy123 article EN Cerebral Cortex 2018-05-10

Abstract Efforts to identify meaningful functional imaging-based biomarkers are limited by the ability reliably characterize inter-individual differences in human brain function. Although a growing number of connectomics-based measures reported have moderate high test-retest reliability, variability data acquisition, experimental designs, and analytic methods precludes generalize results. The Consortium for Reliability Reproducibility (CoRR) is working address this challenge establish...

10.1038/sdata.2014.49 article EN cc-by Scientific Data 2014-12-08

Psychotic disorders (including schizophrenia, schizoaffective disorder, and psychotic bipolar disorder) are devastating illnesses characterized by breakdown in the integration of information processing. Recent advances neuroimaging allow for estimation brain networks on basis intrinsic functional connectivity, but specific network abnormalities poorly understood.To compare connectivity across cerebral cortex patients with schizophrenia spectrum or disorder healthy controls.We studied 100...

10.1001/jamapsychiatry.2013.3469 article EN JAMA Psychiatry 2013-12-04

The goal of the Brain Genomics Superstruct Project (GSP) is to enable large-scale exploration links between brain function, behavior, and ultimately genetic variation. To provide broader scientific community data probe these associations, a repository structural functional magnetic resonance imaging (MRI) scans linked information was constructed from sample healthy individuals. initial release, detailed in present manuscript, encompasses quality screened cross-sectional 1,570 participants...

10.1038/sdata.2015.31 article EN cc-by Scientific Data 2015-07-06

Individual differences in affective and social processes may arise from variability amygdala-medial prefrontal (mPFC) circuitry related genetic heterogeneity. To explore this possibility humans, we examined the structural correlates of trait negative affect a sample 1050 healthy young adults with no history psychiatric illness. Analyses revealed that heightened was associated increased amygdala volume reduced thickness left mPFC region encompassing subgenual rostral anterior cingulate...

10.1523/jneurosci.2531-12.2012 article EN cc-by-nc-sa Journal of Neuroscience 2012-12-12

There is significant interest in the development and application of deep neural networks (DNNs) to neuroimaging data. A growing literature suggests that DNNs outperform their classical counterparts a variety applications, yet there are few direct comparisons relative utility. Here, we compared performance three DNN architectures machine learning algorithm (kernel regression) predicting individual phenotypes from whole-brain resting-state functional connectivity (RSFC) patterns. One was...

10.1016/j.neuroimage.2019.116276 article EN cc-by-nc-nd NeuroImage 2019-10-12
Hieab H.H. Adams Derrek P. Hibar Vincent Chouraki Jason L. Stein Paul Nyquist and 95 more Miguel E. Rentería Stella Trompet Alejandro Arias Väsquez Sudha Seshadri Sylvane Desrivières Ashley Beecham Neda Jahanshad Katharina Wittfeld Sven J. van der Lee Lucija Abramovic Saud Alhusaini Najaf Amin Micael Andersson Konstantinos Arfanakis Benjamin S. Aribisala Nicola J. Armstrong Lavinia Athanasiu Tomas Axelsson Alexa S. Beiser Manon Bernard Joshua C. Bis Laura M. E. Blanken Susan H. Blanton Marc M. Bohlken Marco P. Boks Janita Bralten Adam M. Brickman Owen Carmichael M. Mallar Chakravarty Ganesh Chauhan Qiang Chen Christopher R. K. Ching Gabriel Cuéllar-Partida Anouk den Braber Nhat Trung Doan Stefan Ehrlich Irina Filippi Tian Ge Sudheer Giddaluru Aaron L. Goldman Rebecca F. Gottesman Corina U. Greven O. Grimm Michael Griswold Tulio Guadalupe Johanna Haß Unn K. Haukvik Saima Hilal Edith Hofer David Hoehn Avram J. Holmes Martine Hoogman Deborah Janowitz Tianye Jia Dalia Kasperavičiūtė Sung Eun Kim Marieke Klein Bernd Kraemer Phil H. Lee Jiemin Liao David C. Liewald Lorna M. Lopez Michelle Luciano Christine Macare André F. Marquand Mar Matarín Karen A. Mather Manuel Mattheisen Bernard Mazoyer David R. McKay Rebekah McWhirter Yuri Milaneschi Nazanin Mirza‐Schreiber Ryan L. Muetzel Susana Muñoz Maniega Kwangsik Nho Allison C. Nugent Loes M. Olde Loohuis Jaap Oosterlaan Martina Papmeyer Irene Pappa Lukas Pirpamer Sara Pudas Benno Pütz Kumar B. Rajan Adaikalavan Ramasamy Jennifer S. Richards Shannon L. Risacher Roberto Roiz‐Santiáñez Nanda Rommelse Emma J. Rose Natalie A. Royle Tatjana Rundek Philipp G. Sämann Claudia L. Satizábal

10.1038/nn.4398 article EN Nature Neuroscience 2016-10-03

BackgroundThere is considerable interest in a dimensional transdiagnostic approach to psychiatry. Most studies have derived factors based only on clinical symptoms, which might miss possible links between psychopathology, cognitive processes, and personality traits. Furthermore, many psychiatric focus higher-order association brain networks, thereby neglecting the potential influence of huge swaths brain.MethodsA multivariate data-driven (partial least squares) was used identify latent...

10.1016/j.biopsych.2019.06.013 article EN cc-by-nc-nd Biological Psychiatry 2019-06-25
Sophia Frangou Amirhossein Modabbernia Steven Williams Efstathios Papachristou Gaëlle E. Doucet and 95 more Ingrid Agartz Moji Aghajani Theophilus N. Akudjedu Anton Albajes‐Eizagirre Dag Alnæs Kathryn Alpert Micael Andersson Nancy C. Andreasen Ole A. Andreassen Philip Asherson Tobias Banaschewski Núria Bargalló Sarah Baumeister Ramona Baur‐Streubel Alessandro Bertolino Aurora Bonvino Dorret I. Boomsma Stefan Borgwardt Josiane Bourque Daniel Brandeis Alan Breier Henry Brodaty Rachel M. Brouwer Jan K. Buitelaar Geraldo F. Busatto Randy L. Buckner Vince D. Calhoun Erick J. Canales‐Rodríguez Dara M. Cannon Xavier Caseras F. Xavier Castellanos Simon Červenka Tiffany M. Chaim‐Avancini Christopher R. K. Ching Viktoria Chubar Vincent P. Clark Patricia Conrod Annette Conzelmann Benedicto Crespo‐Facorro Fabrice Crivello Eveline A. Crone Anders M. Dale Udo Dannlowski Christopher G. Davey Eco J. C. de Geus Lieuwe de Haan Greig I. de Zubicaray Anouk den Braber Erin W. Dickie Annabella Di Giorgio Nhat Trung Doan Erlend S. Dørum Stefan Ehrlich Susanne Erk Thomas Espeseth Helena Fatouros‐Bergman Simon E. Fisher Jean‐Paul Fouché Barbara Franke Thomas Frodl Paola Fuentes‐Claramonte David C. Glahn Ian H. Gotlib Hans J. Grabe O. Grimm Nynke A. Groenewold Dominik Grotegerd Oliver Gruber Patricia Gruner Rachel E. Gur Ruben C. Gur Tim Hahn Ben J. Harrison Catharine A Hartman Sean N. Hatton Andreas Heinz Dirk J. Heslenfeld Derrek P. Hibar Ian B. Hickie Beng‐Choon Ho Pieter J. Hoekstra Sarah Hohmann Avram J. Holmes Martine Hoogman Norbert Hosten Fleur M. Howells Hilleke E. Hulshoff Pol Chaim Huyser Neda Jahanshad Anthony James Terry L. Jernigan Jiyang Jiang Erik G. Jönsson John A. Joska René S. Kahn

Delineating the association of age and cortical thickness in healthy individuals is critical given with cognition behavior. Previous research has shown that robust estimates between brain morphometry require large-scale studies. In response, we used cross-sectional data from 17,075 aged 3-90 years Enhancing Neuroimaging Genetics through Meta-Analysis (ENIGMA) Consortium to infer age-related changes thickness. We fractional polynomial (FP) regression quantify thickness, computed normalized...

10.1002/hbm.25364 article EN Human Brain Mapping 2021-02-17

Abstract Humans survive and thrive through social exchange. Yet, dependency also comes at a cost. Perceived isolation, or loneliness, affects physical mental health, cognitive performance, overall life expectancy, increases vulnerability to Alzheimer’s disease-related dementias. Despite severe consequences on behavior the neural basis of loneliness remains elusive. Using UK Biobank population imaging-genetics cohort ( n = ~40,000, aged 40–69 years when recruited, mean age 54.9), we test for...

10.1038/s41467-020-20039-w article EN cc-by Nature Communications 2020-12-15

Resting-state functional magnetic resonance imaging (rs-fMRI) allows estimation of individual-specific cortical parcellations. We have previously developed a multi-session hierarchical Bayesian model (MS-HBM) for estimating high-quality network-level Here, we extend the to estimate areal-level While parcellations comprise spatially distributed networks spanning cortex, consensus is that parcels should be localized, is, not span multiple lobes. There disagreement about whether strictly...

10.1093/cercor/bhab101 article EN Cerebral Cortex 2021-03-31

Abstract How individual differences in brain network organization track behavioral variability is a fundamental question systems neuroscience. Recent work suggests that resting-state and task-state functional connectivity can predict specific traits at the level. However, most studies focus on single traits, thus not capturing broader relationships across behaviors. In large sample of 1858 typically developing children from Adolescent Brain Cognitive Development (ABCD) study, we show...

10.1038/s41467-022-29766-8 article EN cc-by Nature Communications 2022-04-25

Significance Historically, most research on the biological origins of psychiatric illness has focused individual diagnostic categories, studied in isolation. Mounting evidence indicates that nominally distinct diagnoses are not separated by clear neurobiological boundaries. Here, we derive functional connectomic signatures over 1,000 individuals, including patients presenting with different categories impairment (psychosis), clinical diagnoses, and severity as reflected treatment seeking....

10.1073/pnas.1820780116 article EN cc-by Proceedings of the National Academy of Sciences 2019-04-15
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