M. A. Nalls

ORCID: 0000-0003-0319-4325
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About
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Research Areas
  • Parkinson's Disease Mechanisms and Treatments
  • Genetic Associations and Epidemiology
  • Lysosomal Storage Disorders Research
  • Neurological diseases and metabolism
  • Cellular transport and secretion
  • Cancer-related molecular mechanisms research
  • Carbohydrate Chemistry and Synthesis
  • Amyotrophic Lateral Sclerosis Research
  • Nutrition, Genetics, and Disease
  • Genetic and phenotypic traits in livestock
  • Nuclear Receptors and Signaling
  • Epigenetics and DNA Methylation
  • Health, Environment, Cognitive Aging
  • Alzheimer's disease research and treatments
  • Bioinformatics and Genomic Networks
  • Machine Learning in Healthcare
  • Lipid metabolism and disorders
  • Advanced Proteomics Techniques and Applications
  • Studies on Chitinases and Chitosanases
  • Health and Well-being Studies
  • Menopause: Health Impacts and Treatments
  • Chemokine receptors and signaling
  • Peptidase Inhibition and Analysis
  • RNA Research and Splicing
  • Histone Deacetylase Inhibitors Research

National Institute on Aging
2009-2025

National Institutes of Health
2011-2025

Data Tecnica International (United States)
2018-2025

Institute on Aging
2025

National Institute of Neurological Disorders and Stroke
2024-2025

University Memory and Aging Center
2018

University of California, San Francisco
2018

University College London
2018

University of Reading
2018

Texas Tech University
2018

Recent studies indicate an increased frequency of mutations in the gene encoding glucocerebrosidase (GBA), a deficiency which causes Gaucher's disease, among patients with Parkinson's disease. We aimed to ascertain GBA ethnically diverse group disease.Sixteen centers participated our international, collaborative study: five from Americas, six Europe, two Israel, and three Asia. Each center genotyped standard DNA panel permit comparison genotyping results across centers. Genotypes phenotypic...

10.1056/nejmoa0901281 article EN New England Journal of Medicine 2009-10-21
Aude Nicolas Kevin P. Kenna Alan E. Renton Nicola Ticozzi Faraz Faghri and 95 more Ruth Chia Janice A. Dominov Brendan Kenna Mike A. Nalls Pamela Keagle Alberto Rivera William Camu Natalie A. Murphy Joke J.F.A. van Vugt Joshua T. Geiger Rick A. A. van der Spek Hannah A. Pliner Shankaracharya Bradley Smith David J. Stone Simon Topp Yevgeniya Abramzon Soragia Athina Gkazi John D. Eicher Aoife Kenna Gabriele Mora Aude Nicolas Kevin P. Kenna Nilo Riva Jessica Mandrioli Claudia Caponnetto Stefania Battistini Paolo Volanti Vincenzo La Bella F. L. Conforti Johnathan Cooper‐Knock Sonia Messina Isabella Laura Simone Francesca Trojsi Jeffrey D. Rothstein Lorne Zinman Rick A. A. van der Spek Hannah A. Pliner Margherita Capasso Luigi Ferrucci Cristiane Araújo Martins Moreno Sitharthan Kamalakaran David B. Goldstein Aaron D. Gitler Tim Harris R Myers Hemali Phatnani Rajeeva Musunuri Uday Shankar Evani Avinash Abhyankar Michael C. Zody Julia Kaye Steven Finkbeiner Stacia K. Wyman Alex Lenail Leandro de Araújo Lima Ernest Fraenkel Clive N. Svendsen Leslie M. Thompson Jennifer E. Van Eyk James Berry Jonathan Mill Stephen J. Kolb Merit Cudkowicz Emily G. Baxi Michael Benatar J. Paul Taylor Evadnie Rampersaud Gang Wu Joanne Wuu Giuseppe Lauria Federico Verde Isabella Fogh Cinzia Tiloca Giacomo P. Comi Gianni Sorarù Cristina Cereda Philippe Corcia Hannu Laaksovirta Liisa Myllykangas Lilja Jansson Miko Valori John Ealing Hisham Hamdalla Sara Rollinson Stuart Pickering‐Brown Richard W. Orrell Katie Sidle Andrea Malaspina John Hardy Andrew B. Singleton Janel O. Johnson Sampath Arepalli Peter C. Sapp Merit Cudkowicz

10.1016/j.neuron.2018.02.027 article EN publisher-specific-oa Neuron 2018-03-01
Vivek Swarup Flora I. Hinz Jessica E. Rexach K Noguchi Hiroyoshi Toyoshiba and 95 more Akira Oda Keisuke Hirai Arjun Sarkar Nicholas T. Seyfried Chialin Cheng Stephen J. Haggarty Raffaele Ferrari Jonathan D. Rohrer Adaikalavan Ramasamy John Hardy Dena Hernandez Mike A. Nalls Andrew B. Singleton John B. Kwok Carol Dobson‐Stone William S. Brooks Peter R. Schofield Glenda M. Halliday John R. Hodges Olivier Piguet Lauren Bartley Elizabeth Thompson Eric Haan Isabel Hernández Agustı́n Ruiz Merçé Boada Barbara Borroni Alessandro Padovani Nigel J. Cairns Carlos Cruchaga Giuliano Binetti Roberta Ghidoni Luisa Benussi Gianluigi Forloni Diego Albani Daniela Galimberti Chiara Fenoglio María Serpente Elio Scarpini Jordi Clarimón Alberto Lleó Rafael Blesa María Landqvist Waldö Karin Nilsson Christer Nilsson Ian R. Mackenzie Ging‐Yuek Robin Hsiung David M. A. Mann Jordan Grafman Christopher M. Morris Johannes Attems Timothy D. Griffiths Ian G. McKeith Alan Thomas Evelyn Jaros Pietro Pietrini Edward D. Huey Eric M. Wassermann Michael Tierney Atik Baborie Pau Pástor Sara Ortega‐Cubero Cristina Razquín Elena Alonso Robert Perneczky Janine Diehl‐Schmid Panagiotis Alexopoulos Alexander Kurz Innocenzo Rainero Elisa Rubino Lorenzo Pinessi Ekaterina Rogaeva Peter St George‐Hyslop Giacomina Rossi Fabrizio Tagliavini Giorgio Giaccone James B. Rowe Johannes C. M. Schlachetzki James Uphill John Collinge Simon Mead Adrian Danek Vivianna M. Van Deerlin Murray Grossman John Q. Trojanowski Stuart Pickering‐Brown Parastoo Momeni Julie van der Zee Marc Cruts Christine Van Broeckhoven Stefano F. Cappa Isabelle Leber Alexis Brice Didier Hannequin Véronique Golfier

10.1038/s41591-018-0223-3 article EN Nature Medicine 2018-11-28
Luke W. Bonham Celeste M. Karch Chun Chieh Fan Chin Hong Tan Ethan G. Geier and 95 more Yunpeng Wang Natalie Wen Iris Broce Yi Li Matthew J. Barkovich Raffaele Ferrari John Hardy Parastoo Momeni Günter U. Höglinger Ulrich Müller Christopher P. Hess Leo P. Sugrue William P. Dillon Gerard D. Schellenberg Bruce L. Miller Ole A. Andreassen Anders M. Dale A. James Barkovich Jennifer S. Yokoyama Rahul S. Desikan Raffaele Ferrari D. G. Hernandez Mike A. Nalls Jonathan D. Rohrer Adaikalavan Ramasamy John B. Kwok Carol Dobson‐Stone Peter R. Schofield Glenda M. Halliday J. R. Hodges Olivier Piguet Lauren Bartley E. Aubrey Thompson Eric Haan Ivó H. Hernández Agustı́n Ruiz Merçé Boada Barbara Borroni Alessandro Padovani Carlos Cruchaga N.J. Cairns Luisa Benussi Giuliano Binetti Roberta Ghidoni Gianluigi Forloni Diego Albani Daniela Galimberti Chiara Fenoglio María Serpente Elio Scarpini Jordi Clarimón Alberto Lleó Rafael Blesa María Landqvist Waldö Karin Nilsson Christer Nilsson Ian R. Mackenzie Ging‐Yuek Robin Hsiung David Mann Jordan Grafman Christopher M. Morris Johannes Attems Timothy D. Griffiths Ian G. McKeith Alan Thomas Pietro Pietrini Edward D. Huey Eric M. Wassermann Atik Baborie Evelyn Jaros Michael Tierney Pau Pástor Cristina Razquín Sara Ortega‐Cubero Elena Alonso Robert Perneczky Janine Diehl‐Schmid Panagiotis Alexopoulos Alexander Kurz Innocenzo Rainero Elisa Rubino Lorenzo Pinessi Ekaterina Rogaeva Peter St George‐Hyslop Giacomina Rossi Fabrizio Tagliavini Giorgio Giaccone James B. Rowe Johannes C. M. Schlachetzki James Uphill John Collinge Simon Mead Adrian Danek V.M. Van Deerlin Murray Grossman

Abstract Neurodegenerative diseases likely share common underlying pathobiology. Although prior work has identified susceptibility loci associated with various dementias, few, if any, studies have systematically evaluated shared genetic risk across several neurodegenerative diseases. Using genome-wide association data from large (total n = 82,337 cases and controls), we utilized a previously validated approach to identify overlap reveal pathways between progressive supranuclear palsy (PSP),...

10.1038/s41398-017-0049-7 article EN cc-by Translational Psychiatry 2018-04-11
Fulya Akçimen Kimberly Paquette Peter Wild Crea Paula Saffie Awad Charles Achoru and 95 more Funmilola Taiwo Simon Ozomma Gerald Onwuegbuzie Marzieh Khani Spencer Grant Lukman Owolabi Chiamaka Okereke Olajumoke Oshinaike Emmanuel Iwuozo Paul Suhwan Lee Shyngle Oyakhire Nosakhare Osemwegie Kensuke Daida Sani Abubakar Adedunni Olusanya Mariam Isayan Rami Traurig Adebimpe I. Ogunmodede Sarah Samuel Mary B. Makarious Fawzy A. Saad Rashidat Amoke Olanigan Kristin Levine Ewere Marie Ogbimi Dan Vitale Francis Odiase Mathew J. Koretsky FI Ojini Olanike Odeniyi Zih‐Hua Fang Nkechi Obianozie Deborah J. Hall Ernest Nwazor Tao Xie Francisca Nwaokorie Mahesh Padmanaban Paul Nwani Ejaz A. Shamim Alero Nnama David G. Standaert Morenikeji Komolafe Marissa Dean Godwin Osaigbovo Elizabeth A. Disbrow Ismail O. Ishola Ashley Rawls Frank Imarhiagbe Shivika Chandra Cyril Erameh Vanessa K. Hinson Naomi Louie Ahmed O. Idowu Justin Solle Scott A. Norris Abdullahi Adinoyi Ibrahim Camilla Kilbane Gauthaman Sukumar Lisa Shulman Daniel Ezuduemoih Julia Staisch Sarah Breaux Clifton L. Dalgard Erin R. Foster Abiodun Bello Andrew Ameri Raquel Real Erica Ikwenu Huw R. Morris Roosevelt Anyanwu Erin Furr‐Stimming Kimberley Billingsley Wemimo Alaofin Pilar Álvarez Jerez Osigwe P. Agabi Dena Hernández Rufus Akinyemi Sampath Arepalli Laksh Malik Raymond Owolabi Yakub Nyandaiti Hampton L. Leonard Kolawole Wahab Kathryn Step Oladunni Abiodun Carlos Hernández Fatimah Binta Abdullahi Hirotaka Iwaki Soraya Bardien Christine Klein John Hardy Henry Houlden Kamalini Ghosh Galvelis Mike A. Nalls Nabila Dahodwala Whitley W. Aamodt

Abstract Elucidating the genetic contributions to Parkinson’s disease (PD) etiology across diverse ancestries is a critical priority for development of targeted therapies in global context. We conducted largest sequencing characterization potentially disease-causing, protein-altering and splicing mutations 710 cases 11,827 controls from genetically predicted African or admixed ancestries. explored copy number variants (CNVs) runs homozygosity (ROHs) prioritized early onset familial cases....

10.1101/2025.01.14.25320205 preprint EN cc-by medRxiv (Cold Spring Harbor Laboratory) 2025-01-15

Abstract Backgrounds Biomedical research requires sophisticated understanding and reasoning across multiple specializations. While large language models (LLMs) show promise in scientific applications, their capability to safely accurately support complex biomedical remains uncertain. Methods We present CARDBiomedBench , a novel question-and-answer benchmark for evaluating LLMs research. For our pilot implementation, we focus on neurodegenerative diseases (NDDs), domain requiring integration...

10.1101/2025.01.15.633272 preprint EN public-domain bioRxiv (Cold Spring Harbor Laboratory) 2025-01-19

Endemic viral infections with low pathogenicity are often overlooked due to their mild symptoms, yet they can exert long-term effects on cellular function and contribute disease pathogenesis. While have been implicated in neurodegenerative disorders, impact the neuronal proteome remains poorly understood. Here, we differentiated human induced pluripotent stem cells (KOLF2.1J) into mature neurons investigate virus-induced proteomic changes following infection five neurotropic endemic viruses:...

10.1101/2025.03.17.643709 preprint EN public-domain bioRxiv (Cold Spring Harbor Laboratory) 2025-03-17
Lara M. Lange Kristin Levine Susan H. Fox Connie Marras Nazish Rafique and 95 more Nicole Kuznetsov Dan Vitale Hirotaka Iwaki Katja Lohmann Luca Marsili Alberto J. Espay Peter Bauer Christian Beetz Jessica Martin Stewart A. Factor Lenora A. Higginbotham Honglei Chen Hampton L. Leonard Mike A. Nalls Niccolò E. Mencacci Huw R. Morris Andrew Singleton Christine Klein Cornelis Blauwendraat Zih‐Hua Fang Emilia Gatto Marcelo Kauffman Samson Khachatryan Zaruhi Tavadyan Claire E. Shepherd Julie Hunter Kishore R. Kumar Melina Ellis Miguel E. Rentería Sulev Kõks Alexander Zimprich Artur Francisco Schumacher Schuh Carlos Roberto de Mello Rieder Paula Saffie Awad Vítor Tumas Sarah Camargos Edward A. Fon Oury Monchi Ted Fon Benjamin Pizarro Galleguillos Patricio Olguı́n Marcelo Miranda M. Leonor Bustamante Pedro Chaná Beisha Tang Huifang Shang Jifeng Guo Piu Chan Wei Luo Gonzálo Arboleda Jorge Orozco Marlene Jiménez-Del-Río Álvaro Hernández-Flores Mohamed Salama Walaa A. Kamel Yared Z. Zewde Alexis Brice Jean‐Christophe Corvol Ana Westenberger Eva‐Juliane Vollstedt Harutyun Madoev Joanne Trinh Johanna Junker Anastasia Illarionova Brit Mollenhauer Franziska Hopfner Günter U. Höglinger Manu Sharma Thomas Gasser Sergiu Groppa Albert Akpalu Georgia Xiromerisiou Georgios Hadjigorgiou Efthymios Dadiotis Ioannis E. Dagklis Ioannis Tarnanas Leonidas Stefanis María Stamelou Alex Medina Germaine Hiu-Fai Chan Nelson Yuk-Fai Cheung Nancy Y. Ip Phillip Chan Xiaopu Zhou Asha Kishore Divya KP Pramod Kr. Pal Prashanth Lingappa Kukkle Roopa Rajan Rupam Borgohain Mehri Salari Andrea Quattrone Monica Gagliardi Enza Maria Valente Micol Avenali

Abstract LRRK2 -PD represents the most common form of autosomal dominant Parkinson’s disease. We identified p.L1795F variant in three families and six additional unrelated cases using genetic data from over 50,000 individuals. Carriers with available genotyping shared a haplotype. The clinical presentation resembles other forms. Combined published functional evidence showing strongly enhanced kinase activity, we provide that is pathogenic.

10.1038/s41531-025-00896-2 article EN cc-by npj Parkinson s Disease 2025-03-25

Microglia are immune cells of the brain and act as major antigen presenting cells. Antigen presentation involves human leukocyte (HLA) complex, which is implicated in genetic risk multiple neurodegenerative diseases. How HLA affects function microglia context disease remains unclear. Here, we investigated epitopes their protein interactome induced pluripotent stem cell (iPSC)-derived microglia-like (iMGLs) using systematic mass spectrometry (MS)-based immunopeptidomics, whole-cell...

10.1101/2025.04.23.650327 preprint EN public-domain 2025-04-26

There are 90 independent genome-wide significant genetic risk variants for Parkinson's disease (PD) but currently only five nominated loci PD progression. The biology of progression is likely to be central importance in defining mechanisms that can used develop new treatments. We studied 6766 patients, over 15,340 visits with a mean follow-up between 4.2 and 15.7 years carried out survival studies time motor endpoint, defined by reaching Hoehn Yahr stage 3 or greater, death (mortality). was...

10.1038/s41531-024-00729-8 article EN cc-by npj Parkinson s Disease 2024-06-07

Parkinson's disease (PD) is an incurable, progressive and common movement disorder that increasing in incidence globally because of population aging. We hypothesized the landscape rare, protein-altering variants could provide further insights into pathogenesis. Here we performed whole-exome sequencing followed by gene-based tests on 4,298 PD cases 5,512 controls Asian ancestry. showed GBA1 SMPD1 were significantly associated with risk, replication a 5,585 5,642 controls. refined variant...

10.1038/s43587-024-00760-7 article EN cc-by-nc-nd Nature Aging 2024-11-21

Lens transparency, or the magnitude of cataract severity, is a potential in vivo marker aging distinguishable from diagnosed cataract. To explore lens transparency as aging, we determined its association with leukocyte telomere length (LTL) measured quantitative polymerase chain reaction. Cataract severity was directly 259 participants, and prevalent incident surgery were ascertained 2,750 participants Health, Aging, Body Composition Study. LTL unassociated clinical outcomes. Six had...

10.1093/gerona/glr034 article EN The Journals of Gerontology Series A 2011-03-07

Background and purpose Although the genetic contribution to stroke risk is well known, it remains unclear if young‐onset has a stronger than old‐onset stroke. This study aims compare heritability of ischaemic between young old, using common variants from whole‐genome array data in population‐based samples. Methods analysis included 4050 cases 5765 controls six populations European ancestry; 47% were (age < 55 years). To quantify for these unrelated individuals, pairwise relatedness was...

10.1111/ene.12827 article EN European Journal of Neurology 2015-09-02

<h3>Background</h3> Peripheral arterial disease (PAD) is associated with significant morbidity and mortality, has a higher prevalence in African Americans than Caucasians. Ankle–arm index (AAI) the ratio of systolic blood pressure leg to that arm, and, when low, marker PAD. <h3>Methods</h3> The authors used an admixture mapping approach search for genetic loci low AAI. Using data from 1040 American participants observational, population based Health, Aging, Body Composition Study who were...

10.1136/jmg.2008.064808 article EN Journal of Medical Genetics 2009-07-07
Luke W. Bonham Natasha Z. R. Steele Celeste M. Karch Claudia Manzoni Ethan G. Geier and 95 more Natalie Wen Aaron Ofori-Kuragu Parastoo Momeni John Hardy Zachary Miller Christopher P. Hess Patrick A. Lewis Bruce L. Miller William W. Seeley Sergio E. Baranzini Rahul S. Desikan Raffaele Ferrari Jennifer S. Yokoyama Raffaele Ferrari Dena Hernandez Mike A. Nalls Jonathan D. Rohrer Adaikalavan Ramasamy John B. Kwok Carol Dobson‐Stone Peter R. Schofield Glenda M. Halliday J. R. Hodges Olivier Piguet Laura Bartley E. Aubrey Thompson Iván Hernández Ramírez Agustı́n Ruiz Merçé Boada Barbara Borroni Alessandro Padovani Carlos Cruchaga N.J. Cairns Luisa Benussi Giuliano Binetti Roberta Ghidoni Gianluigi Forloni Diego Albani Daniela Galimberti Chiara Fenoglio María Serpente Elio Scarpini Jordi Clarimón Alberto Lleó Rafael Blesa María Landqvist Waldö Kristina Nilsson Christer Nilsson Ian R. Mackenzie Ging‐Yuek Robin Hsiung David M. A. Mann Jordan Grafman Christopher M. Morris Johannes Attems Timothy D. Griffiths Ian G. McKeith Alan Thomas Pietro Pietrini Edward D. Huey Eric M. Wassermann Atik Baborie Evelyn Jaros Michael Tierney Pau Pástor Cristina Razquín Sara Ortega‐Cubero Elena Alonso Robert Perneczky Janine Diehl‐Schmid Panagiotis Alexopoulos Alexander Kurz Innocenzo Rainero Elisa Rubino Lorenzo Pinessi E. Rogaeva Peter St George‐Hyslop Giacomina Rossi Fabrizio Tagliavini Giorgio Giaccone Diego Albani James B. Rowe Johannes C. M. Schlachetzki James Uphill John Collinge Simon Mead Adrian Danek V.M. Van Deerlin Murray Grossman J Q Trojanowski Julie van der Zee Christine Van Broeckhoven Stefano F. Cappa Isabelle Leber Didier Hannequin Véronique Golfier

The neuroanatomical profile of behavioral variant frontotemporal dementia (bvFTD) suggests a common biological etiology disease despite disparate pathologic causes; we investigated the genetic underpinnings this selective regional vulnerability to identify new risk factors for bvFTD.We used recently developed analytical techniques designed address limitations genome-wide association studies generate protein interaction network 63 bvFTD genes. We characterized using gene expression data from...

10.1212/nxg.0000000000000266 article EN cc-by-nc-nd Neurology Genetics 2018-10-01

Abstract Recently, a novel African ancestry specific Parkinson’s disease (PD) risk signal was identified at the gene encoding glucocerebrosidase ( GBA1 ). This variant (rs3115534-G) is carried by ∼50% of West PD cases and imparts dose-dependent increase in for disease. The has varied frequencies across groups, but almost absent European Asian populations. high clinical therapeutic interest. Damaging bi-allelic protein-coding variants cause Gaucher mono-allelic confer Dementia with Lewy...

10.1101/2024.02.20.24302827 preprint EN cc-by-nc-nd medRxiv (Cold Spring Harbor Laboratory) 2024-02-24

Abstract In this paper, we leveraged Large Language Models(LLMs) to accelerate data wrangling and automate labor-intensive aspects of discovery harmonization. This work promotes interoperability standards enhances discovery, facilitating AI-readiness in biomedical science with the generation Common Data Elements (CDEs) as key harmonizing multiple datasets. Thirty-one studies, various ontologies, medical coding systems served source material create CDEs from which available metadata context...

10.1101/2024.10.17.24315618 preprint EN cc-by-nc medRxiv (Cold Spring Harbor Laboratory) 2024-10-17
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