Hanfei Xu

ORCID: 0000-0003-1318-0816
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Research Areas
  • Chronic Obstructive Pulmonary Disease (COPD) Research
  • Genetic Associations and Epidemiology
  • Epigenetics and DNA Methylation
  • Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis
  • Asthma and respiratory diseases
  • Bone health and osteoporosis research
  • Pulmonary Hypertension Research and Treatments
  • Liver Disease Diagnosis and Treatment
  • Bioinformatics and Genomic Networks
  • RNA modifications and cancer
  • Fatty Acid Research and Health
  • Neonatal Respiratory Health Research
  • Delphi Technique in Research
  • Pediatric health and respiratory diseases
  • Obesity, Physical Activity, Diet
  • Hip and Femur Fractures
  • Crystallization and Solubility Studies
  • Lung Cancer Treatments and Mutations
  • X-ray Diffraction in Crystallography
  • Genetic Syndromes and Imprinting
  • Genetic Mapping and Diversity in Plants and Animals
  • Nutrition and Health in Aging
  • Liver Diseases and Immunity
  • Nutrition, Genetics, and Disease
  • Birth, Development, and Health

Boston University
2017-2025

Xi’an Jiaotong-Liverpool University
2024

Cancer Research And Biostatistics
2022

Georgetown University
2017-2018

Georgetown University Medical Center
2017-2018

Hefei University of Technology
2016

Zhejiang University
2008

Rationale: Idiopathic pulmonary fibrosis (IPF) is a complex lung disease characterized by scarring of the that believed to result from an atypical response injury epithelium. Genome-wide association studies have reported signals implicating multiple pathways including host defense, telomere maintenance, signaling, and cell-cell adhesion.Objectives: To improve our understanding factors increase IPF susceptibility identifying previously unreported genetic associations.Methods: We conducted...

10.1164/rccm.201905-1017oc article EN cc-by American Journal of Respiratory and Critical Care Medicine 2019-11-11
Pierrick Wainschtein Deepti Jain Zhili Zheng Stella Aslibekyan Diane M. Becker and 95 more Wenjian Bi Jennifer A. Brody Jenna C. Carlson Adolfo Correa Margaret Mengmeng Du Lindsay Fernández‐Rhodes Kendra Ferrier Misa Graff Xiuqing Guo Jiang He Nancy L. Heard‐Costa Heather M. Highland Joel N. Hirschhorn Candace M Howard-Claudio Carmen R. Isasi Rebecca D. Jackson Jicai Jiang Roby Joehanes Anne E. Justice Rita R. Kalyani Sharon L. R. Kardia Ethan M. Lange Meryl S. LeBoff Seunggeun Lee Xihao Li Zilin Li Elise Lim D. Y. Lin Xihong Lin Simin Liu Yingchang Lu JoAnn E. Manson Lisa W. Martin Caitlin McHugh Julie Mikulla Solomon K. Musani Maggie Ng Deborah A. Nickerson Nicholette D. Palmer James A. Perry Ulrike Peters Michael Preuß Qibin Qi Laura M. Raffield Laura J. Rasmussen‐Torvik Alex P. Reiner Emily M. Russell Colleen M. Sitlani Jennifer A. Smith Cassandra N. Spracklen Tao Wang Zhe Wang Jennifer Wessel Hanfei Xu Mohammad Yaser Sachiko Yoneyama Kendra A. Young Jingwen Zhang Xinruo Zhang Hufeng Zhou Xiaofeng Zhu Sebastian Zoellner Namiko Abe Gonçalo R. Abecasis François Aguet Laura Almasy Álvaro Alonso Seth A. Ament Peter Anderson Pramod Anugu Deborah Applebaum‐Bowden Kristin Ardlie Dan E. Arking Allison E. Ashley‐Koch Tim Assimes Paul L. Auer Dimitrios Avramopoulos Najib Ayas Adithya Balasubramanian John Barnard Kathleen C. Barnes R. Graham Barr Emily Barron‐Casella Lucas Barwick Terri H. Beaty Gerald J. Beck Lewis C. Becker Rebecca Beer Amber L. Beitelshees Emelia J. Benjamin Takis Benos Marcos Bezerra Larry Bielak Joshua C. Bis Thomas W. Blackwell

10.1038/s41588-021-00997-7 article EN Nature Genetics 2022-03-01

ABSTRACT Older adults with type 2 diabetes (T2D) tend to have normal or greater areal bone mineral density (aBMD), as measured by DXA, than those who do not (non-T2D). Yet risk of fracture is higher in T2D, including 40% 50% increased hip risk. We used HR-pQCT investigate structural mechanisms underlying skeletal fragility T2D. compared cortical and trabecular microarchitecture, density, area, strength T2D non-T2D. In secondary analyses we evaluated whether associations between measures...

10.1002/jbmr.3240 article EN Journal of Bone and Mineral Research 2017-09-20

<h3>Importance</h3> Many studies of the association between obesity and mortality rely on weight status at a single point in time, making it difficult to adequately address bias associated with reverse causality. <h3>Objective</h3> To investigate maximum body mass index (BMI) all-cause without consequences <h3>Design, Setting, Participants</h3> Prospective cohort for original offspring cohorts Framingham Heart Study. The follow-up period started from baseline examination 13 6 ended December...

10.1001/jamanetworkopen.2018.4587 article EN cc-by-nc-nd JAMA Network Open 2018-11-16

Rationale: Interstitial lung abnormalities (ILAs) are associated with the highest genetic risk locus for idiopathic pulmonary fibrosis (IPF); however, extent to which there unique associations among individuals ILAs or additional overlap IPF is not known.Objectives: To perform a genome-wide association study (GWAS) of ILAs.Methods: and subpleural-predominant subtype were assessed on chest computed tomography (CT) scans in AGES (Age Gene/Environment Susceptibility), COPDGene (Genetic...

10.1164/rccm.201903-0511oc article EN American Journal of Respiratory and Critical Care Medicine 2019-07-24

Background and Aims NAFLD is increasing in prevalence will soon be the most common chronic liver disease. Liver stiffness, as assessed by vibration‐controlled transient elastography (VCTE), correlates with hepatic fibrosis, an important predictor of liver‐related all‐cause mortality. Although fat associated cardiovascular risk factors, association between fibrosis factors less clear. Approach Results We performed VCTE, assessing controlled attenuation parameter (CAP; measure steatosis)...

10.1002/hep.31608 article EN Hepatology 2020-10-30

Rationale: In addition to rare genetic variants and the MUC5B locus, common contribute idiopathic pulmonary fibrosis (IPF) risk. The predictive power of outside locus for IPF interstitial lung abnormalities (ILAs) is unknown. Objectives: We tested value polygenic risk scores (PRSs) with without region on IPF, ILA, ILA progression. Methods: developed PRSs that included (PRS-M5B) excluded (PRS-NO-M5B) (500-kb window around rs35705950-T) using an genome-wide association study. assessed PRS...

10.1164/rccm.202212-2257oc article EN American Journal of Respiratory and Critical Care Medicine 2023-07-31

The association between aging and idiopathic pulmonary fibrosis has been established. associations aging-related biomarkers interstitial lung abnormalities (ILA) have not comprehensively evaluated.

10.1164/rccm.202007-2993oc article EN American Journal of Respiratory and Critical Care Medicine 2020-10-20

Osteoporosis, a disease characterized by low bone mineral density (BMD), increases the risk for fractures. Conventional factors alone do not completely explain measured BMD or osteoporotic fracture risk. Metabolomics may provide additional information. We aim to identify BMD-associated metabolomic markers that are predictive of assessed 209 plasma metabolites liquid chromatography with tandem mass spectrometry (LC-MS/MS) in 1552 Framingham Offspring Study participants, and femoral neck (FN)...

10.1002/jbmr.4240 article EN Journal of Bone and Mineral Research 2020-12-01

Abstract Triple-negative breast cancer (TNBC) is traditionally considered a glycolytic tumor with poor prognosis while lacking targeted therapies. Here we show that high expression of dihydrolipoamide S-succinyltransferase (DLST), tricarboxylic acid (TCA) cycle enzyme, predicts overall and recurrence-free survival among TNBC patients. DLST depletion suppresses growth induces death in subsets human cell lines, which are capable utilizing glutamine anaplerosis. Metabolomics profiling reveals...

10.1038/s42003-021-02805-8 article EN cc-by Communications Biology 2021-11-16

Abstract Introduction Observational studies have shown that body mass index (BMI) and waist‐to‐hip ratio (WHR) are both inversely associated with lung function, as assessed by forced vital capacity (FVC) expiratory volume in 1 s (FEV1). However, observational data susceptible to confounding reverse causation. Methods We selected genetic instruments based on their relevant large‐scale genome‐wide association studies. Summary statistics of function asthma came from the UK Biobank SpiroMeta...

10.1111/ahg.12506 article EN Annals of Human Genetics 2023-04-03

Summary Background Adiposity amplifies the genetic risk of non‐alcoholic fatty liver disease (NAFLD). Aim We evaluated association between overweight‐years, a cumulative exposure based on product duration and severity excess body weight (body mass index (BMI) ≥ 25 kg/m 2 ), fat fibrosis. Methods This is longitudinal analysis derived from prospective cohort adults in Framingham Heart Study who underwent genotyping vibration‐controlled‐transient‐elastography with controlled attenuation...

10.1111/apt.17452 article EN Alimentary Pharmacology & Therapeutics 2023-03-16

Body mass index (BMI) is associated with chronic obstructive pulmonary disease (COPD) mortality, but the underlying mechanisms are unclear. The effect of genetic variants aggregated into a polygenic score may elucidate causal and predict risk.

10.1164/rccm.202308-1384oc article EN American Journal of Respiratory and Critical Care Medicine 2024-03-12

Importance Chronic obstructive pulmonary disease (COPD) is often undiagnosed. Although genetic risk plays a significant role in COPD susceptibility, its utility guiding spirometry testing and identifying undiagnosed cases unclear. Objective To determine whether polygenic score (PRS) enhances the identification of beyond case-finding questionnaire (eg, Lung Function Questionnaire) using conventional factors respiratory symptoms. Design, Setting, Participants This cross-sectional analysis...

10.1001/jama.2024.24212 article EN JAMA 2025-01-22
Xinruo Zhang Jennifer A. Brody Mariaelisa Graff Heather M. Highland Nathalie Chami and 95 more Hanfei Xu Zhe Wang Kendra Ferrier Geetha Chittoor Navya Shilpa Josyula Mariah Meyer Shreyash Gupta Xihao Li Zilin Li Matthew Allison Diane M. Becker Lawrence F. Bielak Joshua C. Bis Meher Preethi Boorgula Donald W. Bowden Jai Broome Erin Buth Christopher S. Carlson Kyong–Mi Chang Sameer Chavan Yen‐Feng Chiu Lee‐Ming Chuang Matthew P. Conomos Dawn L. DeMeo Mengmeng Du Ravindranath Duggirala Celeste Eng Alison E. Fohner Barry I. Freedman Melanie E. Garrett Xiuqing Guo Chris Haiman Ben Heavner Bertha Hidalgo James E. Hixson Yuk‐Lam Ho Brian D. Hobbs Donglei Hu Qin Hui Chii‐Min Hwu Rebecca D. Jackson Deepti Jain Rita R. Kalyani Sharon L.R. Kardia Tanika N. Kelly Ethan M. Lange Michael A. LeNoir Changwei Li Loı̈c Le Marchand Merry‐Lynn McDonald Caitlin McHugh Alanna C. Morrison Take Naseri Jeffrey R. O’Connell Christopher J O'Donnell Nicholette D. Allred James S. Pankow James A. Perry Ulrike Peters Michael Preuß D. C. Rao Elizabeth A. Regan Sefuiva M Reupena Dan M. Roden José Rodríguez‐Santana Colleen M. Sitlani Jennifer A. Smith Hemant K. Tiwari Ramachandran S. Vasan Zeyuan Wang Daniel E. Weeks Jennifer Wessel Kerri L. Wiggins Lynne R. Wilkens Peter W.F. Wilson Lisa R. Yanek Zachary T. Yoneda Wei Zhao Sebastian Zöllner Donna K. Arnett Allison E. Ashley‐Koch Kathleen C. Barnes John Blangero Eric Boerwinkle Esteban G. Burchard April P. Carson Daniel I. Chasman Yii‐Der Ida Chen Joanne E. Curran Myriam Fornage Victor R. Gordeuk Jiang He Susan R. Heckbert Lifang Hou Marguerite R. Irvin

10.1038/s41467-025-58420-2 article EN cc-by Nature Communications 2025-04-11

Background Genetic susceptibility may be associated with earlier onset of chronic obstructive pulmonary disease (COPD). We hypothesised that a polygenic risk score (PRS) for COPD would age diagnosis COPD. Methods In 6647 non-Hispanic White (NHW) and 2464 African American (AA) participants from COPDGene, 6812 the Framingham Heart Study (FHS), we tested relationship PRS diagnosis. Age at was determined by: 1) self-reported or 2) visits when moderate-to-severe airflow limitation (Global...

10.1183/13993003.01954-2021 article EN European Respiratory Journal 2022-02-03
Heming Wang Raymond Noordam Brian E. Cade Karen Schwander Thomas W. Winkler and 95 more Jiwon Lee Yan V. Sun Amy R. Bentley Alisa K. Manning Hugues Aschard Tuomas O. Kilpeläinen Marjan Ilkov Michael R. Brown A.R.V.R. Horimoto Melissa A. Richard Traci M. Bartz Dina Vojinović Elise Lim Jovia L. Nierenberg Yongmei Liu Kumaraswamy Naidu Chitrala Tuomo Rankinen Solomon K. Musani Nora Franceschini Rainer Rauramaa Maris Alver Phyllis C. Zee Sarah E. Harris Peter J. van der Most Ilja M. Nolte Patricia B. Munroe Nicholette D. Palmer Brigitte Kühnel Stefan Weiß Wanqing Wen Kelly Hall Leo‐Pekka Lyytikäinen Jeff O’Connell Guðný Eiríksdóttir Lenore J. Launer Paul S. de Vries Dan E. Arking Han Chen Eric Boerwinkle José Eduardo Krieger Pamela J. Schreiner Stephen Sidney James M. Shikany Kenneth Rice Yii‐Der Ida Chen Sina A. Gharib Joshua C. Bis Annemarie I. Luik M. Arfan Ikram André G. Uitterlinden Najaf Amin Hanfei Xu Daniel Levy Jiang He Kurt K. Lohman Alan B. Zonderman Treva Rice Mario Sims Gregory Wilson Tamar Sofer Stephen S. Rich Walter Palmas Jie Yao Xiuqing Guo Jerome I. Rotter Nienke R. Biermasz Dennis O. Mook‐Kanamori Lisa W. Martin Ana Barac Robert B. Wallace Daniel J. Gottlieb Pirjo Komulainen Sami Heikkinen Reedik Mägi Lili Milani Andres Metspalu John M. Starr Yuri Milaneschi RJ Waken Chuan Gao Mélanie Waldenberger Annette Peters Konstantin Strauch Thomas Meitinger Till Roenneberg Uwe Völker Marcus Dörr Xiao‐Ou Shu Sutapa Mukherjee David R. Hillman Mika Kähönen Lynne E. Wagenknecht Christian Gieger Hans J. Grabe Wei Zheng

10.1038/s41380-021-01087-0 article EN Molecular Psychiatry 2021-04-15

Rationale: There is increasing evidence that aberrant processes occurring in the airways may precede development of idiopathic pulmonary fibrosis (IPF); however, there has been no prior confirmatory data derived from imaging studies.Objectives: To assess quantitative measures airway wall thickness (AWT) populations characterized for interstitial lung abnormalities (ILA) and IPF.Methods: Computed tomographic chest AWT were available 6,073, 615, 1,167, 38 participants COPDGene (Genetic...

10.1513/annalsats.201806-424oc article EN Annals of the American Thoracic Society 2018-12-13

ABSTRACT Weight loss in older adults is associated with increased bone and fracture. Little known about the potential impact of weight on cortical trabecular density, microarchitecture, strength. In this study, participants were members Framingham Offspring Cohort (769 women, 595 men; mean age 70 ± 8 years), who underwent high-resolution peripheral quantitative computed tomography (HR-pQCT) scanning at tibia radius 2012 to 2016. measurements taken every 4 6 years used assess recent change...

10.1002/jbmr.3472 article EN Journal of Bone and Mineral Research 2018-05-29
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